Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6165

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6164: 14532 - BLAST ECSIT domain-containing protein [Rhizoctonia solani A..., at 149620 to 151505 14532 mRNA_6165: 14533 - HMMPfam-WD domain, G-beta repeat-PF00400,HMMPfam-F-box-like-PF12937,SMART-A Receptor for Ubiquitination Targets-SM00256,SUPERFAMILY--SSF50978,SUPERFAMILY--SSF81383, at 151697 to 155852 14533 mRNA_6166: 14534 - Hypothetical Protein, at 156004 to 157222 14534

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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151,574 - 0.2
151,868 - -0.7
151,895 - 0.3
152,793 - 14533 mRNA_6165 0.26 -0.9
152,802 + 14533 mRNA_6165 0.27 0.2
153,077 + 14533 mRNA_6165 0.33 -1.3
153,088 + 14533 mRNA_6165 0.33 -0.1
153,209 - 14533 mRNA_6165 0.36 -0.1
153,351 - 14533 mRNA_6165 0.40 1.4
153,361 + 14533 mRNA_6165 0.40 -1.3
153,365 + 14533 mRNA_6165 0.40 1.5
153,397 + 14533 mRNA_6165 0.41 -0.1
153,399 - 14533 mRNA_6165 0.41 0.3
153,405 + 14533 mRNA_6165 0.41 -2.3
153,406 + 14533 mRNA_6165 0.41 0.8
153,417 + 14533 mRNA_6165 0.41 1.0
153,421 + 14533 mRNA_6165 0.41 -0.2
153,477 - 14533 mRNA_6165 0.43 -1.0
153,485 + 14533 mRNA_6165 0.43 -0.3
153,487 + 14533 mRNA_6165 0.43 -0.3
153,488 - 14533 mRNA_6165 0.43 -0.5
153,492 - 14533 mRNA_6165 0.43 1.0
153,941 - 14533 mRNA_6165 0.54 -1.0
153,945 + 14533 mRNA_6165 0.54 -0.3
154,171 - 14533 mRNA_6165 0.60 0.3
154,228 - 14533 mRNA_6165 0.61 -0.4
154,266 - 14533 mRNA_6165 0.62 0.9
154,778 - 14533 mRNA_6165 0.74 0.3
154,797 + 14533 mRNA_6165 0.75 0.5
155,074 - 14533 mRNA_6165 0.81 -1.1
155,074 - 14533 mRNA_6165 0.81 -2.6
155,128 - 14533 mRNA_6165 0.83 -0.3
155,185 - 14533 mRNA_6165 0.84 0.0
155,224 - 14533 mRNA_6165 0.85 1.0
155,226 + 14533 mRNA_6165 0.85 -0.2
155,337 - 14533 mRNA_6165 0.88 -0.2
155,504 + -1.4
155,627 + 0.6
155,645 - 0.5
155,652 + 0.2
155,661 - 1.1
155,822 + 0.5
155,823 + 0.9
155,832 + -0.1
155,926 - 1.4
155,926 - -0.0
155,931 - 0.6
155,956 + 0.1
155,960 - -1.4
155,970 - -2.5
156,148 + 14534 mRNA_6166 0.12 0.1
156,252 - 14534 mRNA_6166 0.20 -0.2
156,729 - 14534 mRNA_6166 0.59 -0.3
156,832 - 14534 mRNA_6166 0.68 1.3