Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6143

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6142: 14510 - Hypothetical Protein, at 107739 to 108173 14510 mRNA_6143: 14511 - HMMPfam-Fungal specific transcription factor domain-PF04082,SMART-Fungal specific transcription factor domain-SM00906, at 108337 to 111111 14511

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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107,346 - 0.5
107,359 - 0.2
107,363 + 1.8
107,371 - 0.1
107,372 - 0.5
107,375 - 0.2
107,376 + -0.7
107,390 + 0.6
107,395 + 0.5
107,488 - 1.1
107,507 + -1.2
107,523 - -0.6
107,535 - 0.5
107,535 - 0.3
107,536 + 0.0
107,542 + 0.9
107,559 + 0.1
107,574 - -0.8
107,674 - -0.6
107,691 - 0.6
107,819 - 14510 mRNA_6142 0.18 -0.4
107,981 + 14510 mRNA_6142 0.56 -0.1
108,234 - -0.5
108,409 - 0.5
108,537 - -0.2
109,006 + 14511 mRNA_6143 0.24 -0.1
109,083 + 14511 mRNA_6143 0.27 -0.6
109,333 + 14511 mRNA_6143 0.36 -0.2
109,604 - 14511 mRNA_6143 0.46 -1.1
109,880 - 14511 mRNA_6143 0.56 0.8
110,022 - 14511 mRNA_6143 0.61 -0.7
110,155 + 14511 mRNA_6143 0.66 -1.2
110,738 + 14511 mRNA_6143 0.87 0.5
111,117 - 1.7
111,722 - 0.0
111,730 + -0.7
111,863 - -1.1
111,863 - -1.6
111,870 - -0.0
111,872 - -0.9
111,883 - 0.4
111,890 + -1.4
111,923 + 0.4
111,932 - -0.0
111,981 + -2.4
111,983 - 0.1
111,983 - -1.1
111,984 - -0.7
111,991 - 0.6
111,992 + -0.0
111,992 + -1.1
112,006 - 1.1
112,006 + -2.7
112,009 + -1.1
112,011 + -1.1
112,011 + -0.5
112,015 + 1.0
112,016 - 1.0
112,020 + 1.0