Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6135

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6134: 14502 - KOG1477 SPRY domain-containing proteins, at 88060 to 89781 14502 mRNA_6135: 14503 - K08614 ADAM28 disintegrin and metalloproteinase domain-containing protein 28, at 90272 to 93233 14503 mRNA_6136: 14504 - Hypothetical Protein, at 93449 to 95989 14504

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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89,730 - -0.3
89,849 - -2.5
89,992 + -1.0
89,995 - 0.3
90,043 - -0.1
90,163 + 0.6
90,176 - 0.5
90,196 - -0.5
90,309 + -2.3
90,310 - 1.4
90,317 - 0.2
90,326 + -0.4
90,341 - -0.2
90,476 - 0.1
90,495 + -0.2
90,524 + 1.2
90,620 + 14503 mRNA_6135 0.12 0.1
90,622 - 14503 mRNA_6135 0.12 0.5
90,667 - 14503 mRNA_6135 0.13 -2.2
90,765 - 14503 mRNA_6135 0.17 0.3
90,782 - 14503 mRNA_6135 0.17 0.2
90,901 - 14503 mRNA_6135 0.21 -1.4
91,077 - 14503 mRNA_6135 0.27 1.8
91,396 - 14503 mRNA_6135 0.38 -2.4
91,804 + 14503 mRNA_6135 0.52 -0.4
92,224 + 14503 mRNA_6135 0.66 -3.2
92,506 - 14503 mRNA_6135 0.75 -0.2
92,511 + 14503 mRNA_6135 0.76 -0.2
92,540 - 14503 mRNA_6135 0.77 1.4
92,694 - 14503 mRNA_6135 0.82 1.7
92,820 + 14503 mRNA_6135 0.86 -0.8
93,147 + -1.3
93,225 + 0.1
93,266 + 1.9
93,286 - 0.6
93,575 + -2.9
93,832 + 14504 mRNA_6136 0.15 -0.4
94,179 + 14504 mRNA_6136 0.29 -0.6