Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6133

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6132: 14500 - K20630 CHN1_2, ARHGAP2_3 chimaerin, at 80380 to 84392 14500 mRNA_6133: 14501 - HMMPfam-bZIP transcription factor-PF00170,ProSitePatterns-Basic-leucine zipper (bZIP) domain signature.-PS00036,ProSiteProfiles-Basic-leucine zipper (bZIP) domain profile.-PS50217,SMART-basic region leucin zipper-SM00338,SUPERFAMILY--SSF57959, at 85316 to 87118 14501 mRNA_6134: 14502 - KOG1477 SPRY domain-containing proteins, at 88060 to 89781 14502

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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84,582 + -2.1
84,720 - -1.7
84,721 - 1.2
84,869 - -3.0
84,871 - -0.3
84,890 - -0.2
84,935 + -0.2
85,033 - 0.4
85,039 - -0.8
85,045 - -0.6
85,056 - -0.3
85,064 - -1.4
85,075 - -1.6
85,095 - -2.5
85,099 - -1.1
85,106 - -0.2
85,113 - -1.7
85,115 + -0.8
85,144 + 0.7
85,282 - -0.1
86,214 - 14501 mRNA_6133 0.50 0.2
86,287 - 14501 mRNA_6133 0.54 -0.8
86,457 - 14501 mRNA_6133 0.63 -0.4
86,565 + 14501 mRNA_6133 0.69 -0.5
86,687 + 14501 mRNA_6133 0.76 -0.2
86,706 - 14501 mRNA_6133 0.77 0.8
86,726 - 14501 mRNA_6133 0.78 -1.0
86,840 - 14501 mRNA_6133 0.85 2.3
86,842 - 14501 mRNA_6133 0.85 2.4
86,859 - 14501 mRNA_6133 0.86 0.1
86,864 - 14501 mRNA_6133 0.86 1.4
86,877 - 14501 mRNA_6133 0.87 2.5
87,002 - 0.1
87,012 - 1.3
87,018 + -1.3
87,027 + 1.6
87,033 + -0.9
87,137 - 0.5
87,139 - 0.9
87,139 - 1.3
87,139 - 2.6
87,151 + -0.7
87,156 - -0.7
87,164 + 0.6
87,171 - -1.2
87,174 + 2.7
87,176 - 0.3
87,183 + -1.3
87,184 + -0.8
87,193 - 0.1
87,198 - 0.4
87,199 - 1.9
87,199 - -0.1
87,199 + 0.1
87,200 + 0.2
87,339 - 0.0
87,341 - 1.4
87,341 + -1.7
87,342 - 0.7
87,346 - 0.2
87,347 - 0.2
87,347 - 1.1
87,352 + 0.2
87,357 - -3.1
87,359 - 0.8
87,362 - 0.1
87,363 - -0.1
87,368 - -2.6
87,377 - 0.6
87,393 - -0.0
87,394 + 0.2
87,515 + 1.5
87,518 - 0.9
87,518 + -0.5
87,698 - -0.1