Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6132

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6131: 14499 - K01057 PGLS, pgl, devB 6-phosphogluconolactonase, at 79041 to 80063 14499 mRNA_6132: 14500 - K20630 CHN1_2, ARHGAP2_3 chimaerin, at 80380 to 84392 14500 mRNA_6133: 14501 - HMMPfam-bZIP transcription factor-PF00170,ProSitePatterns-Basic-leucine zipper (bZIP) domain signature.-PS00036,ProSiteProfiles-Basic-leucine zipper (bZIP) domain profile.-PS50217,SMART-basic region leucin zipper-SM00338,SUPERFAMILY--SSF57959, at 85316 to 87118 14501

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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80,394 + -1.0
80,704 - 0.9
81,721 - 14500 mRNA_6132 0.33 -0.3
81,745 - 14500 mRNA_6132 0.34 0.7
81,903 - 14500 mRNA_6132 0.38 -0.0
81,942 + 14500 mRNA_6132 0.39 -1.6
82,069 + 14500 mRNA_6132 0.42 1.3
82,481 + 14500 mRNA_6132 0.52 2.8
82,506 - 14500 mRNA_6132 0.53 -1.1
82,783 - 14500 mRNA_6132 0.60 -1.2
83,013 - 14500 mRNA_6132 0.66 0.2
83,022 + 14500 mRNA_6132 0.66 -0.5
83,195 - 14500 mRNA_6132 0.70 0.1
84,043 - -1.1
84,314 + 0.0
84,582 + -2.1
84,720 - -1.7
84,721 - 1.2
84,869 - -3.0
84,871 - -0.3
84,890 - -0.2
84,935 + -0.2
85,033 - 0.4
85,039 - -0.8
85,045 - -0.6
85,056 - -0.3
85,064 - -1.4
85,075 - -1.6
85,095 - -2.5
85,099 - -1.1
85,106 - -0.2
85,113 - -1.7
85,115 + -0.8
85,144 + 0.7
85,282 - -0.1