Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6112

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6111: 14479 - Hypothetical Protein, at 16061 to 17629 14479 mRNA_6112: 14480 - K01785 galM, GALM aldose 1-epimerase, at 17714 to 19844 14480 mRNA_6113: 14481 - K17263 CAND1 cullin-associated NEDD8-dissociated protein 1, at 19972 to 24805 14481

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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16,719 + 14479 mRNA_6111 0.42 0.9
16,817 + 14479 mRNA_6111 0.48 1.1
16,983 - 14479 mRNA_6111 0.59 -0.8
17,034 + 14479 mRNA_6111 0.62 -0.0
17,141 + 14479 mRNA_6111 0.69 -1.1
17,177 - 14479 mRNA_6111 0.71 -1.6
17,181 + 14479 mRNA_6111 0.71 1.2
17,236 + 14479 mRNA_6111 0.75 -1.4
17,259 + 14479 mRNA_6111 0.76 2.5
17,567 + -2.5
17,865 - 0.5
18,020 - 14480 mRNA_6112 0.14 -0.1
18,077 + 14480 mRNA_6112 0.17 1.5
18,276 + 14480 mRNA_6112 0.26 -1.0
18,462 + 14480 mRNA_6112 0.35 0.9
18,464 - 14480 mRNA_6112 0.35 -0.8
18,586 + 14480 mRNA_6112 0.41 -0.2
18,589 - 14480 mRNA_6112 0.41 0.4
18,596 + 14480 mRNA_6112 0.41 0.3
18,598 - 14480 mRNA_6112 0.41 -0.6
18,812 + 14480 mRNA_6112 0.52 -0.5
18,864 - 14480 mRNA_6112 0.54 -0.6
19,160 + 14480 mRNA_6112 0.68 0.6
19,160 + 14480 mRNA_6112 0.68 -1.0
19,242 + 14480 mRNA_6112 0.72 -0.5
19,332 - 14480 mRNA_6112 0.76 0.3
19,368 + 14480 mRNA_6112 0.78 -1.0
19,396 + 14480 mRNA_6112 0.79 0.2
19,505 + 14480 mRNA_6112 0.84 2.4
19,511 + 14480 mRNA_6112 0.84 0.2
19,589 - 14480 mRNA_6112 0.88 -1.0
19,615 - 14480 mRNA_6112 0.89 0.4
19,762 - -0.3
19,763 + 0.1
19,767 - -0.0
19,778 - -0.4
19,789 + 1.1
19,796 + -0.0
19,916 - -0.8
19,922 + 0.7
19,926 + 0.4
19,930 + -1.7
19,932 + 0.1
19,946 + 1.5
20,080 + 0.4
20,205 - -1.5
20,470 + 14481 mRNA_6113 0.10 -0.6
20,606 - 14481 mRNA_6113 0.13 -1.2
20,828 - 14481 mRNA_6113 0.18 1.0