Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6106

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6106: 14474 - K08332 VAC8 vacuolar protein 8, at 223 to 3658 14474 mRNA_6107: 14475 - K14401 CPSF1, CFT1 cleavage and polyadenylation specificity factor subunit 1, at 3990 to 10005 14475

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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39 + -0.4
39 + 3.3
40 + -0.6
40 + 1.3
40 + 0.6
41 + -0.3
56 + 1.0
56 + -0.3
56 + -0.1
58 + 1.2
59 + -1.9
59 + -3.3
62 - 1.1
65 - -0.1
77 + 1.2
84 + -0.8
102 + 0.6
137 + 0.7
151 + -0.4
200 + 0.5
208 + 3.0
216 + -0.3
229 + 1.5
348 - -0.3
430 + -1.6
498 - 1.8
502 - 2.8
685 + 14474 mRNA_6106 0.13 1.1
747 + 14474 mRNA_6106 0.15 -0.5
755 + 14474 mRNA_6106 0.15 0.4
946 + 14474 mRNA_6106 0.21 -0.6
975 + 14474 mRNA_6106 0.22 1.4
1,245 + 14474 mRNA_6106 0.30 -0.6
2,125 + 14474 mRNA_6106 0.55 1.1
2,839 - 14474 mRNA_6106 0.76 0.3
3,125 - 14474 mRNA_6106 0.84 1.2
3,248 - 14474 mRNA_6106 0.88 1.7
3,570 + 0.2
3,665 + -0.2
3,692 + 0.1
3,706 + 0.2
3,726 + -2.9
3,820 + 0.5
3,853 + 0.1
3,859 + -0.0
3,909 - -0.7
3,929 - -0.5