Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6095

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6094: 14462 - K16738 NDE1, NUDE nuclear distribution protein NudE, at 1634041 to 1636155 14462 mRNA_6095: 14463 - KOG0054 Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily, at 1636949 to 1643604 14463 mRNA_6096: 14464 - K05721 FGD2 FYVE, RhoGEF and PH domain containing 2, at 1644523 to 1649566 14464

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,636,847 - 0.2
1,636,857 - 0.1
1,636,861 - -0.8
1,636,861 - 0.2
1,636,864 - 0.2
1,636,870 + 0.3
1,636,877 + 0.5
1,636,881 + 0.0
1,636,888 + 1.4
1,636,889 + -1.3
1,636,913 + 2.8
1,636,954 - -0.6
1,637,000 - 0.5
1,637,019 + 0.6
1,637,019 + 0.5
1,637,028 + -0.3
1,637,036 + 1.4
1,637,170 + 1.2
1,637,171 - 0.6
1,637,311 - -0.5
1,637,320 + 2.0
1,637,338 + 0.8
1,637,639 + 14463 mRNA_6095 0.10 0.0
1,637,751 - 14463 mRNA_6095 0.12 0.3
1,637,925 + 14463 mRNA_6095 0.15 0.2
1,638,009 - 14463 mRNA_6095 0.16 0.3
1,638,174 - 14463 mRNA_6095 0.18 0.5
1,638,345 - 14463 mRNA_6095 0.21 -0.9
1,638,349 - 14463 mRNA_6095 0.21 0.2
1,638,473 - 14463 mRNA_6095 0.23 0.8
1,638,488 + 14463 mRNA_6095 0.23 0.2
1,638,541 + 14463 mRNA_6095 0.24 0.2
1,638,643 - 14463 mRNA_6095 0.25 0.1
1,638,918 + 14463 mRNA_6095 0.30 0.9
1,639,064 + 14463 mRNA_6095 0.32 -0.1
1,639,474 + 14463 mRNA_6095 0.38 0.2
1,639,513 - 14463 mRNA_6095 0.39 -0.3
1,640,001 + 14463 mRNA_6095 0.46 0.6
1,640,085 + 14463 mRNA_6095 0.47 0.4
1,640,800 + 14463 mRNA_6095 0.58 0.1
1,640,830 + 14463 mRNA_6095 0.58 0.4
1,640,950 + 14463 mRNA_6095 0.60 -0.5
1,640,955 - 14463 mRNA_6095 0.60 -0.5
1,641,192 + 14463 mRNA_6095 0.64 0.6
1,641,238 - 14463 mRNA_6095 0.64 0.3
1,641,822 - 14463 mRNA_6095 0.73 0.5
1,641,833 - 14463 mRNA_6095 0.73 0.4
1,641,837 - 14463 mRNA_6095 0.73 0.8
1,641,986 - 14463 mRNA_6095 0.76 0.2
1,642,021 - 14463 mRNA_6095 0.76 -0.5
1,642,163 + 14463 mRNA_6095 0.78 -0.1
1,642,270 - 14463 mRNA_6095 0.80 0.4
1,642,285 + 14463 mRNA_6095 0.80 -0.2
1,642,474 + 14463 mRNA_6095 0.83 2.8
1,642,564 - 14463 mRNA_6095 0.84 2.2
1,642,678 - 14463 mRNA_6095 0.86 1.5
1,642,728 + 14463 mRNA_6095 0.87 0.4
1,642,836 - 14463 mRNA_6095 0.88 -0.8
1,642,836 - 14463 mRNA_6095 0.88 0.2
1,642,842 + 14463 mRNA_6095 0.89 0.6
1,642,925 + 14463 mRNA_6095 0.90 0.2
1,642,987 - -0.1
1,643,174 + 0.9
1,643,316 - 0.5
1,643,333 + 0.0
1,643,840 - -0.3
1,643,898 + 2.3
1,644,079 - 0.9
1,644,079 + -0.6
1,644,310 - 1.0
1,644,314 + -0.2
1,644,334 + 0.5
1,644,468 + 0.1
1,644,485 + 1.7