Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6087

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6086: 14454 - HMMPfam-Cutinase-PF01083,SUPERFAMILY--SSF53474, at 1615836 to 1616999 14454 mRNA_6087: 14455 - KOG1294 Apurinic/apyrimidinic endonuclease and related enzymes, at 1617277 to 1619252 14455 mRNA_6088: 14456 - KOG1294 Apurinic/apyrimidinic endonuclease and related enzymes, at 1619714 to 1621699 14456

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,616,364 - 14454 mRNA_6086 0.45 0.3
1,616,659 - 14454 mRNA_6086 0.71 0.3
1,616,682 + 14454 mRNA_6086 0.73 0.4
1,616,691 - 14454 mRNA_6086 0.73 0.1
1,616,818 + 14454 mRNA_6086 0.84 -1.2
1,617,509 - 14455 mRNA_6087 0.12 2.1
1,617,745 + 14455 mRNA_6087 0.24 0.4
1,617,848 - 14455 mRNA_6087 0.29 -1.0
1,617,971 - 14455 mRNA_6087 0.35 -2.0
1,617,991 - 14455 mRNA_6087 0.36 2.7
1,618,247 - 14455 mRNA_6087 0.49 1.7
1,618,264 + 14455 mRNA_6087 0.50 -1.1
1,618,369 + 14455 mRNA_6087 0.55 -0.2
1,618,421 - 14455 mRNA_6087 0.58 -1.6
1,618,520 + 14455 mRNA_6087 0.63 2.0
1,618,522 - 14455 mRNA_6087 0.63 1.0
1,618,616 + 14455 mRNA_6087 0.68 0.3
1,618,686 - 14455 mRNA_6087 0.71 -3.3
1,618,697 - 14455 mRNA_6087 0.72 -1.2
1,618,736 - 14455 mRNA_6087 0.74 1.1
1,618,896 + 14455 mRNA_6087 0.82 -0.6
1,619,049 - 14455 mRNA_6087 0.90 -0.0
1,619,103 + 0.1
1,619,158 - -1.2
1,619,309 + 1.2
1,619,309 + 0.3
1,619,440 - 1.5
1,619,452 + -0.1
1,619,528 + -0.2
1,619,562 + -0.2
1,619,842 + -2.7
1,619,845 - -0.4
1,619,845 - 0.9
1,619,856 - -0.3
1,619,983 + 14456 mRNA_6088 0.14 -0.4
1,620,055 + 14456 mRNA_6088 0.17 -0.6