Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6086

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6085: 14453 - HMMPfam-Heparinase II/III-like protein-PF07940,SUPERFAMILY--SSF48230, at 1611755 to 1615148 14453 mRNA_6086: 14454 - HMMPfam-Cutinase-PF01083,SUPERFAMILY--SSF53474, at 1615836 to 1616999 14454 mRNA_6087: 14455 - KOG1294 Apurinic/apyrimidinic endonuclease and related enzymes, at 1617277 to 1619252 14455

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,615,157 - 0.8
1,615,176 - 0.1
1,615,183 + -1.5
1,615,295 - 0.1
1,615,328 + -0.1
1,615,336 - 0.9
1,615,345 - -0.2
1,615,421 + 2.0
1,615,473 - -0.4
1,615,480 + 0.6
1,615,512 + 0.2
1,615,518 + 0.0
1,615,544 - 0.1
1,615,544 - 0.4
1,615,544 - 2.7
1,615,546 - -1.5
1,615,549 - -2.1
1,615,579 + 0.6
1,615,633 - -0.2
1,615,633 - -0.5
1,615,633 - -0.6
1,615,634 - 1.2
1,615,634 - 1.5
1,615,647 - 0.9
1,615,649 - 1.5
1,615,650 + -0.9
1,615,653 + 1.6
1,615,653 - 0.3
1,615,656 - 0.5
1,615,677 + 0.4
1,615,722 + 0.6
1,615,767 + 0.6
1,615,794 - 0.8
1,615,811 + -0.8
1,615,814 - -0.1
1,615,815 + 1.2
1,615,827 - -1.7
1,615,945 - -1.7
1,615,959 + 14454 mRNA_6086 0.11 -2.6
1,616,046 + 14454 mRNA_6086 0.18 -1.9
1,616,088 + 14454 mRNA_6086 0.22 -0.7
1,616,090 + 14454 mRNA_6086 0.22 2.4
1,616,364 - 14454 mRNA_6086 0.45 0.3
1,616,659 - 14454 mRNA_6086 0.71 0.3
1,616,682 + 14454 mRNA_6086 0.73 0.4
1,616,691 - 14454 mRNA_6086 0.73 0.1
1,616,818 + 14454 mRNA_6086 0.84 -1.2
1,617,509 - 14455 mRNA_6087 0.12 2.1
1,617,745 + 14455 mRNA_6087 0.24 0.4
1,617,848 - 14455 mRNA_6087 0.29 -1.0
1,617,971 - 14455 mRNA_6087 0.35 -2.0
1,617,991 - 14455 mRNA_6087 0.36 2.7