Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6081

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6080: 14448 - KOG4379 Uncharacterized conserved protein (tumor antigen CML66 in humans), at 1596741 to 1598901 14448 mRNA_6081: 14449 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SMART-Fungal specific transcription factor domain-SM00906,SUPERFAMILY--SSF57701, at 1598988 to 1602551 14449 mRNA_6082: 14450 - K03010 RPB2, POLR2B DNA-directed RNA polymerase II subunit RPB2, at 1603316 to 1607774 14450

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,599,160 + -1.2
1,599,323 - -1.6
1,599,356 + 14449 mRNA_6081 0.10 -0.0
1,599,543 - 14449 mRNA_6081 0.16 -0.3
1,599,640 + 14449 mRNA_6081 0.18 -0.6
1,599,824 + 14449 mRNA_6081 0.23 -0.2
1,599,948 + 14449 mRNA_6081 0.27 -1.7
1,600,122 - 14449 mRNA_6081 0.32 0.9
1,600,142 + 14449 mRNA_6081 0.32 1.1
1,600,249 + 14449 mRNA_6081 0.35 -0.8
1,600,430 + 14449 mRNA_6081 0.40 -0.6
1,600,685 + 14449 mRNA_6081 0.48 1.0
1,600,696 + 14449 mRNA_6081 0.48 0.4
1,600,966 + 14449 mRNA_6081 0.55 -0.8
1,601,169 - 14449 mRNA_6081 0.61 -0.0
1,601,253 - 14449 mRNA_6081 0.64 0.0
1,601,371 - 14449 mRNA_6081 0.67 1.4
1,601,398 + 14449 mRNA_6081 0.68 -1.0
1,601,699 + 14449 mRNA_6081 0.76 -1.1
1,601,699 + 14449 mRNA_6081 0.76 -0.1
1,601,842 - 14449 mRNA_6081 0.80 0.6
1,602,029 + 14449 mRNA_6081 0.85 1.4
1,602,292 + -0.0
1,602,422 - 0.2
1,602,442 + -0.7
1,602,571 - -1.6
1,602,577 + -2.0
1,602,714 - -0.4
1,602,714 + -0.3
1,602,730 - 1.8
1,602,946 - 1.4
1,603,225 - 1.0