Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6048

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6047: 14415 - K17268 COPE coatomer subunit epsilon, at 1515323 to 1516944 14415 mRNA_6048: 14416 - Interpro WSTF, HB1, Itc1p, MBD9 motif 1, at 1517232 to 1519356 14416 mRNA_6049: 14417 - K08517 SEC22 vesicle transport protein SEC22, at 1519896 to 1521308 14417

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,516,432 + 14415 mRNA_6047 0.68 -0.2
1,516,851 + 1.0
1,517,156 - -1.1
1,517,157 - 0.9
1,517,164 - 0.5
1,517,306 + 0.2
1,517,362 + -0.3
1,517,431 + -0.7
1,517,472 - 14416 mRNA_6048 0.11 -1.2
1,517,474 + 14416 mRNA_6048 0.11 1.1
1,517,585 - 14416 mRNA_6048 0.17 -0.8
1,517,598 + 14416 mRNA_6048 0.17 0.9
1,517,627 + 14416 mRNA_6048 0.19 0.7
1,517,627 - 14416 mRNA_6048 0.19 0.4
1,517,627 + 14416 mRNA_6048 0.19 -1.3
1,517,631 + 14416 mRNA_6048 0.19 0.2
1,517,647 - 14416 mRNA_6048 0.20 2.3
1,517,654 + 14416 mRNA_6048 0.20 -1.5
1,518,021 - 14416 mRNA_6048 0.37 2.3
1,518,027 + 14416 mRNA_6048 0.37 0.3
1,518,031 - 14416 mRNA_6048 0.38 -0.8
1,518,074 + 14416 mRNA_6048 0.40 0.3
1,518,227 + 14416 mRNA_6048 0.47 0.2
1,518,343 + 14416 mRNA_6048 0.52 -0.0
1,518,368 + 14416 mRNA_6048 0.53 -0.8
1,518,385 - 14416 mRNA_6048 0.54 0.8
1,518,506 - 14416 mRNA_6048 0.60 -0.6
1,518,507 + 14416 mRNA_6048 0.60 1.2
1,518,525 - 14416 mRNA_6048 0.61 -0.0
1,518,799 - 14416 mRNA_6048 0.74 -0.3
1,518,817 - 14416 mRNA_6048 0.75 -1.1
1,519,024 - 14416 mRNA_6048 0.84 -0.1
1,519,101 - 14416 mRNA_6048 0.88 -1.1
1,519,243 - 0.9
1,519,490 - 0.8
1,519,657 + 0.2
1,519,666 - 4.7
1,519,931 - -0.3
1,519,932 - 0.2
1,519,950 - 2.0
1,520,108 + 14417 mRNA_6049 0.15 -1.1
1,520,136 - 14417 mRNA_6049 0.17 0.2
1,520,222 - 14417 mRNA_6049 0.23 2.1
1,520,231 - 14417 mRNA_6049 0.24 -0.8
1,520,271 + 14417 mRNA_6049 0.27 0.8