Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5936

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5935: 14303 - HMMPfam-Homeobox KN domain-PF05920,ProSiteProfiles-'Homeobox' domain profile.-PS50071,SUPERFAMILY--SSF46689, at 1270620 to 1271852 14303 mRNA_5936: 14304 - HMMPfam-Homeobox domain-PF00046,HMMPfam-Predicted membrane protein (DUF2231)-PF09990,ProSiteProfiles-'Homeobox' domain profile.-PS50071,SMART-Homeodomain-SM00389,SUPERFAMILY--SSF46689, at 1272303 to 1276279 14304 mRNA_5937: 14305 - Hypothetical Protein, at 1276675 to 1277757 14305

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,272,142 - -1.4
1,272,419 + -0.1
1,272,527 + 0.6
1,272,567 - 1.1
1,273,245 - 14304 mRNA_5936 0.24 0.4
1,273,247 - 14304 mRNA_5936 0.24 0.8
1,273,249 - 14304 mRNA_5936 0.24 -0.1
1,273,250 + 14304 mRNA_5936 0.24 -0.4
1,273,282 + 14304 mRNA_5936 0.25 -0.1
1,273,409 + 14304 mRNA_5936 0.28 0.1
1,273,412 + 14304 mRNA_5936 0.28 0.0
1,273,418 - 14304 mRNA_5936 0.28 0.8
1,273,427 - 14304 mRNA_5936 0.28 0.2
1,273,548 - 14304 mRNA_5936 0.31 -0.5
1,273,550 - 14304 mRNA_5936 0.31 1.0
1,273,570 + 14304 mRNA_5936 0.32 0.1
1,273,577 + 14304 mRNA_5936 0.32 1.3
1,273,696 + 14304 mRNA_5936 0.35 -0.8
1,273,738 + 14304 mRNA_5936 0.36 -1.5
1,273,748 + 14304 mRNA_5936 0.36 -0.9
1,273,827 + 14304 mRNA_5936 0.38 0.4
1,273,951 - 14304 mRNA_5936 0.41 1.4
1,273,963 + 14304 mRNA_5936 0.42 -0.7
1,273,964 - 14304 mRNA_5936 0.42 0.2
1,274,161 - 14304 mRNA_5936 0.47 0.7
1,274,525 + 14304 mRNA_5936 0.56 0.1
1,274,994 - 14304 mRNA_5936 0.68 1.4
1,275,034 + 14304 mRNA_5936 0.69 -0.8
1,275,298 - 14304 mRNA_5936 0.75 -0.3
1,276,027 - 0.1
1,276,176 + -0.8
1,276,322 - -1.5
1,276,438 - 0.2
1,276,438 + -0.5
1,276,443 - 0.8
1,276,468 - -1.5
1,276,842 + 14305 mRNA_5937 0.15 -0.2
1,277,113 + 14305 mRNA_5937 0.40 -1.4
1,277,236 - 14305 mRNA_5937 0.52 -0.4