Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5921

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5920: 14288 - K03022 RPC8, POLR3H DNA-directed RNA polymerase III subunit RPC8, at 1245035 to 1246181 14288 mRNA_5921: 14289 - K14789 NOP6 nucleolar protein 6, at 1246509 to 1247671 14289 mRNA_5922: 14290 - KOG2615 Permease of the major facilitator superfamily, at 1248033 to 1250292 14290

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,245,709 + 14288 mRNA_5920 0.59 -1.1
1,246,239 - -0.3
1,246,254 - 1.1
1,246,278 + -1.0
1,246,406 - -2.1
1,246,408 - 1.4
1,246,418 - 1.6
1,246,569 - -1.1
1,246,578 + 0.0
1,246,693 + 14289 mRNA_5921 0.16 0.2
1,246,694 + 14289 mRNA_5921 0.16 -0.6
1,246,972 - 14289 mRNA_5921 0.40 -0.8
1,247,208 - 14289 mRNA_5921 0.60 0.6
1,247,280 - 14289 mRNA_5921 0.66 0.6
1,247,878 + 0.4
1,247,879 + -2.4
1,247,881 - -2.1
1,248,012 + 1.9
1,248,018 - -0.8
1,248,310 + 14290 mRNA_5922 0.12 1.5
1,248,469 + 14290 mRNA_5922 0.19 -1.0
1,248,634 + 14290 mRNA_5922 0.27 -0.5