Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5868

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5867: 14235 - K02950 RP-S12, MRPS12, rpsL small subunit ribosomal protein S12, at 1122384 to 1123037 14235 mRNA_5868: 14236 - HMMPfam-2OG-Fe(II) oxygenase superfamily-PF03171,HMMPfam-non-haem dioxygenase in morphine synthesis N-terminal-PF14226,PRINTS-Isopenicillin N synthase signature-PR00682,ProSiteProfiles-Fe(2+) 2-oxoglutarate dioxygenase domain profile.-PS51471,SUPERFAMILY--SSF51197, at 1123241 to 1124381 14236 mRNA_5869: 14237 - K10808 RRM2 ribonucleoside-diphosphate reductase subunit M2, at 1124723 to 1126548 14237

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,122,330 + -0.2
1,122,342 - -0.2
1,122,351 + 0.1
1,123,071 - 1.1
1,123,079 - 1.5
1,123,088 - -0.2
1,123,202 - -1.1
1,123,516 - 14236 mRNA_5868 0.24 -0.9
1,123,541 + 14236 mRNA_5868 0.26 2.6
1,123,944 - 14236 mRNA_5868 0.62 0.4
1,123,955 - 14236 mRNA_5868 0.63 2.3
1,124,221 + 14236 mRNA_5868 0.86 -0.1
1,124,274 - -0.6
1,124,301 + 0.2