Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5865

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5864: 14232 - K01322 PREP prolyl oligopeptidase, at 1113887 to 1116821 14232 mRNA_5865: 14233 - KOG0800 FOG Predicted E3 ubiquitin ligase, at 1117097 to 1118879 14233 mRNA_5866: 14234 - KOG1454 Predicted hydrolase/acyltransferase (alpha/beta hydrolase superfamily), at 1119164 to 1122161 14234

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,116,425 + 14232 mRNA_5864 0.86 0.1
1,116,458 - 14232 mRNA_5864 0.88 -1.7
1,116,493 + 14232 mRNA_5864 0.89 1.1
1,116,593 + -0.8
1,116,704 - 1.1
1,116,836 - -1.3
1,116,879 + 0.2
1,116,885 + -0.0
1,116,899 + -0.2
1,117,004 - -0.4
1,117,005 - 0.9
1,117,005 - -0.7
1,117,005 - -0.6
1,117,013 - 1.9
1,117,038 - -0.5
1,117,184 + 0.2
1,117,186 + -0.7
1,117,202 + -1.3
1,117,229 - 0.0
1,117,321 + 14233 mRNA_5865 0.13 -0.3
1,117,321 - 14233 mRNA_5865 0.13 2.8
1,117,323 + 14233 mRNA_5865 0.13 0.4
1,117,333 - 14233 mRNA_5865 0.13 -0.0
1,117,358 + 14233 mRNA_5865 0.15 1.0
1,117,772 + 14233 mRNA_5865 0.38 -0.0
1,118,367 - 14233 mRNA_5865 0.71 0.9
1,118,483 - 14233 mRNA_5865 0.78 0.6
1,118,495 - 14233 mRNA_5865 0.78 0.2
1,119,040 - 1.2
1,119,370 + 1.7
1,119,373 + 1.2
1,119,384 + -2.0
1,119,829 + 14234 mRNA_5866 0.22 1.7