Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5850

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5849: 14217 - SMART-Furin-like repeats-SM00261,SUPERFAMILY--SSF57184, at 1079850 to 1082159 14217 mRNA_5850: 14218 - HMMPfam-2OG-Fe(II) oxygenase superfamily-PF03171,HMMPfam-non-haem dioxygenase in morphine synthesis N-terminal-PF14226,ProSiteProfiles-Fe(2+) 2-oxoglutarate dioxygenase domain profile.-PS51471,SUPERFAMILY--SSF51197, at 1082825 to 1084341 14218 mRNA_5851: 14219 - SUPERFAMILY--SSF51735, at 1084885 to 1085792 14219

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,081,928 + 14217 mRNA_5849 0.90 -1.9
1,082,044 + 1.2
1,082,197 + -0.2
1,082,363 - -0.4
1,082,369 - 0.0
1,082,381 - -0.0
1,082,525 - -0.9
1,082,785 - -0.3
1,083,105 + 14218 mRNA_5850 0.18 0.6
1,083,374 + 14218 mRNA_5850 0.36 0.2
1,083,379 - 14218 mRNA_5850 0.37 0.1
1,083,513 - 14218 mRNA_5850 0.45 -2.4
1,083,553 + 14218 mRNA_5850 0.48 0.1
1,083,699 - 14218 mRNA_5850 0.58 1.8
1,083,702 + 14218 mRNA_5850 0.58 1.5
1,083,971 - 14218 mRNA_5850 0.76 0.8
1,084,407 - -2.9
1,084,556 + 2.1
1,084,556 + 1.6
1,084,582 + -0.8
1,084,590 - 2.2
1,084,599 + -0.1
1,084,699 + 0.8
1,084,743 + 0.0
1,084,863 - -2.3
1,085,121 - 14219 mRNA_5851 0.26 -0.5
1,085,173 + 14219 mRNA_5851 0.32 0.5