Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5816

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5816: 14184 - KOG1437 Fasciclin and related adhesion glycoproteins, at 1009642 to 1012931 14184 mRNA_5817: 14185 - K09680 coaW type II pantothenate kinase, at 1013105 to 1015263 14185

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,008,723 - -0.1
1,008,836 - -0.5
1,008,843 + 0.4
1,009,262 - -0.2
1,009,286 - -1.9
1,009,425 - 0.1
1,009,428 + 0.2
1,009,443 - -1.7
1,009,577 + 0.6
1,009,589 + -0.0
1,009,602 + -0.1
1,009,603 + 0.2
1,009,627 - 0.0
1,009,753 + 1.7
1,009,760 + 0.3
1,009,891 - 0.3
1,009,905 - -1.4
1,009,914 + -0.6
1,009,922 + -0.5
1,010,023 - 14184 mRNA_5816 0.12 -0.7
1,010,048 + 14184 mRNA_5816 0.12 1.4
1,010,332 + 14184 mRNA_5816 0.21 0.7
1,010,485 - 14184 mRNA_5816 0.26 0.3
1,010,612 + 14184 mRNA_5816 0.29 1.4
1,010,766 - 14184 mRNA_5816 0.34 -1.3
1,010,910 + 14184 mRNA_5816 0.39 2.1
1,010,914 - 14184 mRNA_5816 0.39 1.7
1,010,914 - 14184 mRNA_5816 0.39 -0.1
1,010,927 - 14184 mRNA_5816 0.39 1.7
1,011,080 - 14184 mRNA_5816 0.44 0.1
1,011,193 - 14184 mRNA_5816 0.47 0.2
1,011,344 + 14184 mRNA_5816 0.52 -2.3
1,011,358 - 14184 mRNA_5816 0.52 0.3
1,011,370 + 14184 mRNA_5816 0.53 1.3
1,011,626 + 14184 mRNA_5816 0.60 2.0
1,011,666 - 14184 mRNA_5816 0.62 0.5
1,011,938 + 14184 mRNA_5816 0.70 -1.7
1,011,965 - 14184 mRNA_5816 0.71 -0.1
1,012,067 - 14184 mRNA_5816 0.74 0.3
1,012,205 - 14184 mRNA_5816 0.78 -0.2
1,012,630 - -0.4
1,012,787 - -0.0
1,013,118 - 0.3