Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5809

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5807: 14175 - HMMPfam-Protein of unknown function (DUF2638)-PF10937, at 986328 to 987350 14175 mRNA_5808: 14176 - HMMPfam-Cytochrome oxidase complex assembly protein 1-PF08695, at 987558 to 988212 14176 mRNA_5809: 14177 - KOG2979 Protein involved in DNA repair, at 988329 to 990216 14177 mRNA_5810: 14178 - K02730 PSMA6 20S proteasome subunit alpha 1, at 990467 to 991553 14178

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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987,333 + 1.6
987,468 + 2.0
987,474 + 1.5
987,508 + -1.3
987,888 - 14176 mRNA_5808 0.50 -0.7
987,905 + 14176 mRNA_5808 0.53 1.4
988,185 + 0.9
988,185 + -0.8
988,206 + -0.6
988,329 + 1.0
988,360 + 0.6
988,489 - 0.3
988,620 - 14177 mRNA_5809 0.15 0.3
988,761 - 14177 mRNA_5809 0.23 -0.9
990,262 - 1.8