Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5789

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5788: 14156 - HMMPfam-Ribosome biogenesis protein SLX9-PF15341, at 943585 to 944558 14156 mRNA_5789: 14157 - KOG2859 DNA repair protein, member of the recA/RAD51 family, at 944648 to 945829 14157 mRNA_5790: 14158 - K01054 MGLL acylglycerol lipase, at 945926 to 947446 14158

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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944,568 + 1.9
944,570 - -0.4
944,673 + 0.6
944,707 - -0.2
944,895 + 14157 mRNA_5789 0.21 -1.0
945,101 + 14157 mRNA_5789 0.38 0.1
945,139 - 14157 mRNA_5789 0.42 -0.1
945,186 - 14157 mRNA_5789 0.46 -0.0
945,252 + 14157 mRNA_5789 0.51 -0.2
945,329 + 14157 mRNA_5789 0.58 2.2
945,390 + 14157 mRNA_5789 0.63 -0.3
945,579 + 14157 mRNA_5789 0.79 0.9
945,596 - 14157 mRNA_5789 0.80 -0.2
945,689 - 14157 mRNA_5789 0.88 1.9
945,741 - -0.4
945,745 - 0.4
945,750 - 0.1
946,005 - -1.4
946,033 + 0.4
946,163 - 14158 mRNA_5790 0.16 -0.2
946,196 + 14158 mRNA_5790 0.18 -1.9
946,604 - 14158 mRNA_5790 0.45 0.5
946,774 + 14158 mRNA_5790 0.56 -0.2
946,792 - 14158 mRNA_5790 0.57 0.6