Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5705

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5704: 14072 - KOG2483 Upstream transcription factor 2/L-myc-2 protein, at 728026 to 730424 14072 mRNA_5705: 14073 - HMMPfam-Cysteine-rich secretory protein family-PF00188,SUPERFAMILY--SSF55797, at 731059 to 731970 14073 mRNA_5706: 14074 - Hypothetical Protein, at 731945 to 733165 14074

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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730,270 - -1.6
730,321 - 0.8
730,477 - 1.7
730,570 - 1.3
730,666 - -0.3
730,720 + -0.4
730,732 + 2.0
730,750 + 1.2
730,890 + -0.6
730,902 + 0.6
730,911 - -1.8
731,155 - 14073 mRNA_5705 0.11 1.0
731,181 - 14073 mRNA_5705 0.13 1.0
731,212 + 14073 mRNA_5705 0.17 0.8
731,802 - 14073 mRNA_5705 0.81 0.2
732,081 + 14074 mRNA_5706 0.11 -0.8
732,085 - 14074 mRNA_5706 0.11 -0.5
732,360 + 14074 mRNA_5706 0.34 0.0
732,377 + 14074 mRNA_5706 0.35 -0.6
732,381 + 14074 mRNA_5706 0.36 0.3
732,655 + 14074 mRNA_5706 0.58 1.6
732,675 + 14074 mRNA_5706 0.60 -0.9
732,845 + 14074 mRNA_5706 0.74 -0.4