Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5694

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5693: 14061 - KOG4186 Peroxisomal biogenesis protein (peroxin), at 704894 to 706050 14061 mRNA_5694: 14062 - HMMPfam-Pyridoxamine 5'-phosphate oxidase-PF13883,SUPERFAMILY--SSF50475, at 706295 to 707436 14062 mRNA_5695: 14063 - K08869 ADCK, ABC1 aarF domain-containing kinase, at 708061 to 710208 14063

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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705,309 - 14061 mRNA_5693 0.36 2.4
705,625 - 14061 mRNA_5693 0.63 0.3
705,655 - 14061 mRNA_5693 0.66 -1.0
705,786 - 14061 mRNA_5693 0.77 0.3
705,788 + 14061 mRNA_5693 0.77 0.0
705,819 + 14061 mRNA_5693 0.80 -0.3
706,022 + 0.2
706,083 + 1.1
706,209 - -0.8
706,213 - 0.2
706,221 - 1.0
706,222 + 0.6
706,244 + -0.7
706,256 - -0.1
706,260 - 0.0
706,262 + -0.5
706,392 + -0.1
706,404 + -0.3
706,422 + 14062 mRNA_5694 0.11 -0.0
706,433 + 14062 mRNA_5694 0.12 -1.5
706,435 + 14062 mRNA_5694 0.12 -0.2
706,860 + 14062 mRNA_5694 0.49 -1.7
706,872 - 14062 mRNA_5694 0.51 3.0
707,415 + 1.7
707,464 - 1.1
707,560 + 0.4
707,595 - -0.9
707,622 - 0.3
707,724 - -2.2
707,893 - -1.5
707,896 - -0.7
707,927 + -0.4
708,042 - -0.9
708,216 - -0.0
708,266 - -0.8
708,352 + 14063 mRNA_5695 0.14 1.2