Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5687

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5686: 14054 - K05294 PGAP1 glycosylphosphatidylinositol deacylase, at 690842 to 694591 14054 mRNA_5687: 14055 - K08764 SCP2, SCPX sterol carrier protein 2, at 694932 to 696791 14055 mRNA_5688: 14056 - K12199 VTA1, LIP5 vacuolar protein sorting-associated protein VTA1, at 697061 to 698504 14056

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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694,123 - 14054 mRNA_5686 0.87 -0.5
694,240 - -1.9
694,518 + 0.3
694,526 - 0.6
694,649 + 0.5
694,672 + 2.7
694,673 + 2.7
694,706 - 1.4
694,706 - -0.3
694,708 - -0.4
694,727 - -1.5
694,743 + 0.6
694,748 - 1.8
695,043 + -0.1
695,160 - 14055 mRNA_5687 0.12 1.7
695,322 - 14055 mRNA_5687 0.21 0.1
695,458 - 14055 mRNA_5687 0.28 1.2
695,788 + 14055 mRNA_5687 0.46 0.3
696,339 - 14055 mRNA_5687 0.76 -1.6
696,597 - 14055 mRNA_5687 0.90 -0.3
696,778 - -1.6
696,904 - -0.0
696,918 - -1.1
697,523 + 14056 mRNA_5688 0.32 -1.1
697,669 + 14056 mRNA_5688 0.42 -0.6