Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5655

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5654: 14022 - K01637 E4.1.3.1, aceA isocitrate lyase, at 605186 to 607588 14022 mRNA_5655: 14023 - K01115 PLD1_2 phospholipase D1/2, at 607805 to 615263 14023 mRNA_5656: 14024 - HMMPfam-Universal stress protein family-PF00582,PRINTS-Universal stress protein signature-PR01438,SUPERFAMILY--SSF52402, at 615931 to 617472 14024

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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606,899 - 14022 mRNA_5654 0.71 -2.5
607,001 - 14022 mRNA_5654 0.76 -0.5
607,063 + 14022 mRNA_5654 0.78 0.9
607,108 - 14022 mRNA_5654 0.80 0.1
607,157 + 14022 mRNA_5654 0.82 -1.3
607,184 - 14022 mRNA_5654 0.83 -0.0
607,186 + 14022 mRNA_5654 0.83 -0.4
607,205 + 14022 mRNA_5654 0.84 0.2
607,206 + 14022 mRNA_5654 0.84 -0.9
607,207 - 14022 mRNA_5654 0.84 1.0
607,208 - 14022 mRNA_5654 0.84 -2.0
607,209 + 14022 mRNA_5654 0.84 -2.5
607,352 + 0.3
607,518 - -0.3
607,643 - 1.9
607,646 + -1.0
607,648 - 1.5
607,653 + 0.8
607,656 + -0.8
607,659 + 0.8
607,659 + -2.0
607,661 - -0.2
607,668 - 0.8
607,668 - 1.4
607,669 - 0.8
607,671 + 0.6
607,673 - -0.6
607,680 + 1.3
607,681 + -0.9
607,684 - -2.3
607,690 + -1.1
607,709 + -0.0
607,760 + 0.9
607,763 + 0.9
607,769 + -0.7
607,770 - 0.7
607,786 + 0.3
607,818 - -0.4
607,821 + -0.1
607,827 - 0.3
607,853 - 0.0
608,735 + 14023 mRNA_5655 0.12 1.1
608,798 - 14023 mRNA_5655 0.13 1.1
609,616 - 14023 mRNA_5655 0.24 2.5
609,788 - 14023 mRNA_5655 0.27 0.4
609,901 + 14023 mRNA_5655 0.28 -0.7
610,009 + 14023 mRNA_5655 0.30 1.8
610,221 + 14023 mRNA_5655 0.32 -0.8
610,322 + 14023 mRNA_5655 0.34 4.8
610,874 + 14023 mRNA_5655 0.41 -0.2
610,946 - 14023 mRNA_5655 0.42 -1.2
611,927 + 14023 mRNA_5655 0.55 -1.3
612,091 - 14023 mRNA_5655 0.57 -0.9
612,674 + 14023 mRNA_5655 0.65 1.2
612,851 + 14023 mRNA_5655 0.68 -0.8
613,163 - 14023 mRNA_5655 0.72 -0.1
613,979 - 14023 mRNA_5655 0.83 0.9
613,985 - 14023 mRNA_5655 0.83 0.3
614,151 - 14023 mRNA_5655 0.85 -1.0
614,446 - 14023 mRNA_5655 0.89 0.4
614,556 - -1.1
614,585 - -0.8
614,758 - 1.2
615,316 + -0.4
615,343 + -0.4
615,347 + 0.0
615,464 - 1.5
615,511 - 0.4
615,514 + -0.8
615,516 + 0.4
615,529 - -1.7
615,653 - -2.9