Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5654

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5653: 14021 - Hypothetical Protein, at 603450 to 604586 14021 mRNA_5654: 14022 - K01637 E4.1.3.1, aceA isocitrate lyase, at 605186 to 607588 14022 mRNA_5655: 14023 - K01115 PLD1_2 phospholipase D1/2, at 607805 to 615263 14023

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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604,398 + 14021 mRNA_5653 0.83 -0.7
604,546 - 1.3
604,660 - -0.3
604,709 - 0.2
604,809 + 0.3
604,811 + -0.4
604,813 - -1.4
604,850 - 0.4
604,891 - -0.2
604,893 + -1.4
604,897 - -0.3
604,900 + 0.4
604,915 + 0.7
604,916 + 0.0
604,928 - 0.1
604,928 - 0.2
604,928 - 0.0
604,934 - 1.4
604,945 - -1.1
604,987 - 1.5
604,988 - -0.3
605,001 + 2.1
605,005 - 0.5
605,005 + -0.3
605,178 - 0.2
605,456 + 14022 mRNA_5654 0.11 -0.4
605,569 + 14022 mRNA_5654 0.16 -0.7
606,167 + 14022 mRNA_5654 0.41 -0.7
606,332 + 14022 mRNA_5654 0.48 -0.4
606,899 - 14022 mRNA_5654 0.71 -2.5
607,001 - 14022 mRNA_5654 0.76 -0.5
607,063 + 14022 mRNA_5654 0.78 0.9
607,108 - 14022 mRNA_5654 0.80 0.1
607,157 + 14022 mRNA_5654 0.82 -1.3
607,184 - 14022 mRNA_5654 0.83 -0.0
607,186 + 14022 mRNA_5654 0.83 -0.4
607,205 + 14022 mRNA_5654 0.84 0.2
607,206 + 14022 mRNA_5654 0.84 -0.9
607,207 - 14022 mRNA_5654 0.84 1.0
607,208 - 14022 mRNA_5654 0.84 -2.0
607,209 + 14022 mRNA_5654 0.84 -2.5
607,352 + 0.3
607,518 - -0.3
607,643 - 1.9
607,646 + -1.0
607,648 - 1.5
607,653 + 0.8
607,656 + -0.8
607,659 + 0.8
607,659 + -2.0
607,661 - -0.2
607,668 - 0.8
607,668 - 1.4
607,669 - 0.8
607,671 + 0.6
607,673 - -0.6
607,680 + 1.3
607,681 + -0.9
607,684 - -2.3
607,690 + -1.1
607,709 + -0.0
607,760 + 0.9
607,763 + 0.9
607,769 + -0.7
607,770 - 0.7
607,786 + 0.3
607,818 - -0.4
607,821 + -0.1
607,827 - 0.3
607,853 - 0.0