Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5649

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5648: 14016 - K11268 ESCO, ECO1 N-acetyltransferase, at 592841 to 594405 14016 mRNA_5649: 14017 - SUPERFAMILY--SSF52047, at 595094 to 596616 14017 mRNA_5650: 14018 - Hypothetical Protein, at 597091 to 598437 14018

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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594,511 + 0.4
594,646 + 0.7
594,662 + 0.1
594,670 + 0.3
594,920 - 1.7
594,964 - -1.6
594,983 - 0.4
595,152 + -0.2
595,385 - 14017 mRNA_5649 0.19 -0.6
595,404 - 14017 mRNA_5649 0.20 -0.9
595,535 + 14017 mRNA_5649 0.29 0.5
595,540 + 14017 mRNA_5649 0.29 0.4
595,558 + 14017 mRNA_5649 0.30 -1.0
596,261 - 14017 mRNA_5649 0.77 -0.2
596,394 + 14017 mRNA_5649 0.85 -0.8
596,399 + 14017 mRNA_5649 0.86 -0.9
596,570 + -3.1
596,684 + 0.3
596,698 + 0.3
596,701 - 1.5
596,723 - -0.6
597,007 - 0.2
597,030 + 0.1
597,031 - -3.1
597,169 - 1.1
597,176 - 0.9
597,476 - 14018 mRNA_5650 0.29 1.0
597,500 - 14018 mRNA_5650 0.30 0.6
597,568 + 14018 mRNA_5650 0.35 -0.5