Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5646

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5645: 14013 - BLAST putative alkaline phosphatase [Phaeomoniella chlamydo..., at 584713 to 586254 14013 mRNA_5646: 14014 - K00826 E2.6.1.42, ilvE branched-chain amino acid aminotransferase, at 586465 to 587964 14014 mRNA_5647: 14015 - KOG4719 Nuclear pore complex protein, at 588479 to 592654 14015

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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585,542 - 14013 mRNA_5645 0.54 2.9
585,817 + 14013 mRNA_5645 0.72 0.1
585,839 - 14013 mRNA_5645 0.73 0.4
585,844 + 14013 mRNA_5645 0.73 1.7
585,872 + 14013 mRNA_5645 0.75 0.3
586,004 - 14013 mRNA_5645 0.84 0.8
586,166 + -0.8
586,166 + -0.1
586,167 + -1.1
586,283 - 0.4
586,304 - 0.7
586,310 - 0.5
586,316 + -0.5
586,325 + 0.8
586,332 + -0.3
586,333 + 0.6
586,333 - -1.0
586,333 - -0.3
586,354 + -0.2
586,381 - -0.5
586,400 - 1.0
586,407 + 0.5
586,413 + -1.8
586,428 + -0.6
586,435 + -0.4
586,435 + 0.2
586,435 + 0.9
586,442 - -1.5
586,453 + -0.9
586,457 + -0.8
586,464 + -0.2
586,464 - -0.4
586,601 + 2.0
586,609 - -0.5
586,638 + 14014 mRNA_5646 0.12 1.8
586,877 + 14014 mRNA_5646 0.27 0.1
586,906 + 14014 mRNA_5646 0.29 -1.5
587,037 - 14014 mRNA_5646 0.38 0.3
587,808 + 14014 mRNA_5646 0.90 -0.9
587,882 - 2.8
587,908 + -1.4
587,931 - -1.1
588,054 + -0.4
588,057 - 0.5
588,057 - -2.1
588,058 + 0.8
588,101 + 0.1
588,106 + -0.3
588,107 + 0.4
588,121 + -0.5
588,213 + -0.8
588,250 + -0.7
588,548 - 0.5
588,661 - 1.0
588,804 - -0.7
588,824 + -2.2