Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5628

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5627: 13995 - K10756 RFC3_5 replication factor C subunit 3/5, at 539729 to 541360 13995 mRNA_5628: 13996 - SUPERFAMILY--SSF57997, at 541523 to 547167 13996 mRNA_5629: 13997 - K15430 TRM11, TRMT11 tRNA (guanine10-N2)-methyltransferase, at 547536 to 549644 13997

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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541,416 - 0.3
541,421 + 0.0
541,421 + 1.5
541,421 + -0.9
541,421 + -0.3
541,435 - -0.8
541,455 + -0.2
541,543 - 0.7
541,567 + 0.1
541,582 + 0.4
541,729 - -1.1
541,754 + -1.4
541,847 + -0.3
541,862 - 0.9
541,893 - -1.1
541,900 - 0.4
542,004 + 1.7
542,149 + 13996 mRNA_5628 0.11 1.8
542,191 + 13996 mRNA_5628 0.12 -0.5
542,584 - 13996 mRNA_5628 0.19 -0.1
542,708 + 13996 mRNA_5628 0.21 -0.4
542,730 + 13996 mRNA_5628 0.21 -0.8
543,167 + 13996 mRNA_5628 0.29 -3.1
543,208 + 13996 mRNA_5628 0.30 -0.4
543,638 + 13996 mRNA_5628 0.37 -0.7
543,677 + 13996 mRNA_5628 0.38 -0.0
543,830 - 13996 mRNA_5628 0.41 0.6
544,249 - 13996 mRNA_5628 0.48 -0.3
544,439 - 13996 mRNA_5628 0.52 -0.6
544,494 - 13996 mRNA_5628 0.53 0.5
544,938 + 13996 mRNA_5628 0.60 -0.5
544,977 + 13996 mRNA_5628 0.61 0.5
545,122 + 13996 mRNA_5628 0.64 -0.0
545,318 - 13996 mRNA_5628 0.67 2.1
545,504 + 13996 mRNA_5628 0.71 -0.4
545,522 - 13996 mRNA_5628 0.71 0.1
545,601 + 13996 mRNA_5628 0.72 0.6
545,860 - 13996 mRNA_5628 0.77 -0.9
546,145 - 13996 mRNA_5628 0.82 -0.6
546,222 + 13996 mRNA_5628 0.83 0.2
546,301 + 13996 mRNA_5628 0.85 1.2
546,586 - 13996 mRNA_5628 0.90 0.5
546,588 + 13996 mRNA_5628 0.90 -1.3
546,603 + 1.5
546,737 - -0.3
546,885 + 0.1
546,985 - 0.2
547,313 + 0.1
547,328 - -0.5
547,340 + -0.2
547,379 + 0.6
547,464 - -0.1
547,473 - 0.1
547,476 - -1.8
547,478 + -0.1
547,521 - -0.3
547,627 - -0.1
547,787 - 13997 mRNA_5629 0.12 -0.8
547,909 + 13997 mRNA_5629 0.18 -1.0
547,918 - 13997 mRNA_5629 0.18 2.2
548,058 - 13997 mRNA_5629 0.25 0.1
548,090 + 13997 mRNA_5629 0.26 -1.0
548,109 - 13997 mRNA_5629 0.27 -0.2