Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5621

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5620: 13988 - HMMPfam-GRF zinc finger-PF06839, at 528663 to 529956 13988 mRNA_5621: 13989 - Hypothetical Protein, at 530337 to 531503 13989 mRNA_5622: 13990 - K00849 galK galactokinase, at 531659 to 534063 13990

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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529,954 - 1.5
529,955 + -0.1
529,957 + 0.3
529,966 - -0.7
530,050 + 2.9
530,081 - 0.7
530,082 + -0.4
530,083 + -1.0
530,136 + -0.6
531,002 + 13989 mRNA_5621 0.57 0.7
531,108 - 13989 mRNA_5621 0.66 -2.6
531,251 + 13989 mRNA_5621 0.78 -0.4
531,372 - 13989 mRNA_5621 0.89 0.2
531,393 + -0.0
531,404 + -2.7
531,404 + 0.7
531,563 - 1.0
531,663 - 0.4
531,664 + -0.2
531,673 - 1.2
531,679 + -0.2
531,679 - -0.5
531,690 - -0.2
531,698 - 0.9
531,700 + -0.9
531,822 - -1.7
531,841 + -0.3
531,881 - 0.1
531,914 - 13990 mRNA_5622 0.11 -0.3
531,958 - 13990 mRNA_5622 0.12 -0.5
531,961 - 13990 mRNA_5622 0.13 0.6
531,970 + 13990 mRNA_5622 0.13 0.4
531,979 - 13990 mRNA_5622 0.13 1.6
531,983 - 13990 mRNA_5622 0.13 -3.2
531,984 + 13990 mRNA_5622 0.14 0.0
531,987 - 13990 mRNA_5622 0.14 -0.4
532,002 + 13990 mRNA_5622 0.14 -0.1
532,003 + 13990 mRNA_5622 0.14 1.7
532,127 - 13990 mRNA_5622 0.19 0.5
532,142 - 13990 mRNA_5622 0.20 -0.1
532,291 - 13990 mRNA_5622 0.26 -1.6
532,424 - 13990 mRNA_5622 0.32 0.0