Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5610

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5609: 13977 - HMMPfam-Leucine Rich Repeat-PF00560,ProSiteProfiles-Leucine-rich repeat profile.-PS51450,SMART-Leucine-rich repeats, typical (most populated) subfamily-SM00369,SUPERFAMILY--SSF52058, at 502227 to 504581 13977 mRNA_5610: 13978 - KOG1611 Predicted short chain-type dehydrogenase, at 504670 to 507396 13978 mRNA_5611: 13979 - HMMPfam-Protein of unknown function (DUF2433)-PF10360, at 507663 to 510497 13979

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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503,891 + 13977 mRNA_5609 0.71 2.0
503,903 + 13977 mRNA_5609 0.71 0.2
504,176 - 13977 mRNA_5609 0.83 -0.4
504,191 - 13977 mRNA_5609 0.83 1.2
504,191 - 13977 mRNA_5609 0.83 1.5
504,222 + 13977 mRNA_5609 0.85 0.5
504,286 + 13977 mRNA_5609 0.87 -0.4
505,095 + 13978 mRNA_5610 0.16 0.7
505,536 + 13978 mRNA_5610 0.32 0.5
505,650 - 13978 mRNA_5610 0.36 -1.8
505,711 - 13978 mRNA_5610 0.38 0.6
505,801 + 13978 mRNA_5610 0.41 -0.3
505,801 + 13978 mRNA_5610 0.41 -0.3
505,805 - 13978 mRNA_5610 0.42 1.3
505,811 + 13978 mRNA_5610 0.42 -0.4
506,099 + 13978 mRNA_5610 0.52 0.4
506,109 - 13978 mRNA_5610 0.53 0.3
506,111 - 13978 mRNA_5610 0.53 0.4
506,136 + 13978 mRNA_5610 0.54 -0.1
506,372 + 13978 mRNA_5610 0.62 0.9
506,443 - 13978 mRNA_5610 0.65 1.2
506,565 + 13978 mRNA_5610 0.69 1.7
506,820 + 13978 mRNA_5610 0.79 1.3
506,991 + 13978 mRNA_5610 0.85 -1.8
507,001 + 13978 mRNA_5610 0.85 1.8
507,269 - 0.0
507,284 - -1.1
507,292 + -0.5
507,378 + -0.2
507,570 - 0.2
507,594 + 0.7
507,611 - 1.1
508,178 - 13979 mRNA_5611 0.18 1.3