Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5603

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5602: 13970 - HMMPfam-AAA-ATPase Vps4-associated protein 1-PF08432, at 483682 to 484493 13970 mRNA_5603: 13971 - K09523 DNAJC3 DnaJ homolog subfamily C member 3, at 484833 to 486890 13971 mRNA_5604: 13972 - Hypothetical Protein, at 487257 to 489515 13972

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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484,379 + 13970 mRNA_5602 0.86 -1.6
484,571 - -0.3
484,576 + -0.9
484,578 + 0.4
484,587 - 0.4
484,589 - 1.5
484,595 - -1.4
484,604 + -0.0
484,674 - -0.5
484,706 - -0.0
484,729 - 0.0
484,750 + -0.3
484,753 - -0.4
484,876 - 1.2
484,889 - -0.3
484,893 - -1.7
484,900 - 0.7
484,907 - 0.7
484,913 - 1.3
484,913 + 0.1
485,042 + 13971 mRNA_5603 0.10 0.1
485,059 + 13971 mRNA_5603 0.11 0.8
485,195 - 13971 mRNA_5603 0.18 0.2
485,495 + 13971 mRNA_5603 0.32 -0.6
485,518 + 13971 mRNA_5603 0.33 0.2
485,769 - 13971 mRNA_5603 0.45 0.3
485,953 - 13971 mRNA_5603 0.54 -1.2
486,656 - 13971 mRNA_5603 0.89 -0.1
486,690 + -1.0
486,690 + 0.3
486,692 + 1.8
486,817 + 0.0
487,062 - 0.0
487,103 - 0.7
487,698 + 13972 mRNA_5604 0.20 0.2
487,733 - 13972 mRNA_5604 0.21 0.2