Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5594

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5593: 13961 - K00905 BCKDK [3-methyl-2-oxobutanoate dehydrogenase (acetyl-transferring)] kinase, at 463128 to 464888 13961 mRNA_5594: 13962 - K07943 ARL2 ADP-ribosylation factor-like protein 2, at 465150 to 466141 13962 mRNA_5595: 13963 - K11294 NCL, NSR1 nucleolin, at 466415 to 467468 13963

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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464,184 + 13961 mRNA_5593 0.60 -1.7
464,274 + 13961 mRNA_5593 0.65 -1.9
464,286 + 13961 mRNA_5593 0.66 0.6
464,289 - 13961 mRNA_5593 0.66 0.4
464,345 - 13961 mRNA_5593 0.69 -1.6
464,609 + 13961 mRNA_5593 0.84 0.5
464,645 + 13961 mRNA_5593 0.86 -0.2
464,779 - -3.1
464,800 + 1.4
464,898 + -0.8
464,917 - 1.9
464,925 + -1.4
464,926 + 1.1
464,928 + 1.1
464,931 - 0.0
464,935 - 2.0
464,952 - 1.3
465,074 - -1.5
465,084 + 1.6
465,087 + 1.2
465,098 + 0.1
465,217 + -0.0
465,232 + 1.1
465,941 + 13962 mRNA_5594 0.80 1.5
465,949 + 13962 mRNA_5594 0.81 0.5
466,084 + 1.2
466,092 + -0.3
466,221 + 0.9
466,226 + 0.6
466,350 - 1.5
466,371 - -1.1
466,374 + 1.5
466,386 + 0.3
466,409 + -1.1
466,517 + -0.2