Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5573

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5572: 13940 - K18730 GIGYF PERQ amino acid-rich with GYF domain-containing protein, at 405680 to 409565 13940 mRNA_5573: 13941 - BLAST Protein priA [Hypsizygus marmoreus], at 409933 to 411114 13941

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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409,527 + 0.2
409,575 - -0.4
409,590 + 0.2
409,598 - -0.2
409,614 + 0.4
409,614 + 1.4
409,617 - 0.3
409,624 + -0.6
409,670 - 1.6
409,696 - 0.9
409,717 - 1.2
409,730 + 1.1
409,755 - -0.7
409,834 - 0.9
409,863 - -2.8
409,939 + 1.5
410,023 + 3.1
410,040 + -0.2
410,115 + 13941 mRNA_5573 0.15 -0.0
410,306 + 13941 mRNA_5573 0.32 -0.9
410,323 + 13941 mRNA_5573 0.33 -0.1
410,562 + 13941 mRNA_5573 0.53 2.6
410,580 + 13941 mRNA_5573 0.55 0.1
410,769 + 13941 mRNA_5573 0.71 0.5
410,799 + 13941 mRNA_5573 0.73 1.3
410,808 + 13941 mRNA_5573 0.74 -1.8
410,828 - 13941 mRNA_5573 0.76 -0.6
410,852 - 13941 mRNA_5573 0.78 -2.5
410,865 + 13941 mRNA_5573 0.79 0.3
410,988 + 13941 mRNA_5573 0.89 -0.4
411,001 - -2.4
411,007 + 0.8
411,010 + -0.1
411,036 + -0.2
411,059 - -2.6
411,130 - -1.4
411,136 + 1.5
411,149 - -1.3
411,173 - -0.6
411,180 + 0.7
411,185 + -0.9
411,198 + -0.5
411,198 + -0.1
411,220 - 1.1
411,264 - 1.6
411,269 + -1.3
411,271 + 1.3
411,282 + -1.1
411,288 - 0.1
411,293 + -0.9
411,296 - 0.8
411,307 + 0.6
411,310 - -0.2
411,311 - -0.7
411,312 + -0.1
411,315 + 0.0
411,316 - -0.4
411,317 + -1.2
411,317 + 0.1
411,318 + 0.7
411,319 - -0.6
411,319 + 0.2
411,322 - 1.1
411,328 - -1.4
411,337 - 2.7
411,337 + 1.3
411,338 + -0.9
411,345 - 1.0
411,364 - -0.6
411,368 - -0.2
411,374 - -0.9
411,383 - 2.4
411,388 - 0.5
411,395 + -0.0
411,412 + -0.4
411,416 + 0.8
411,424 - -1.9
411,427 - -2.0
411,433 + 0.1
411,438 - -1.1
411,449 - 0.2
411,453 + 2.3
411,455 - 0.5
411,458 - -1.1
411,465 - -0.3
411,466 - 1.1
411,475 + 0.3
411,482 + 0.1
411,489 - -0.7
411,496 - 1.6
411,503 + -0.2
411,504 - 1.9
411,524 - -2.2
411,531 + -0.3
411,541 - 1.3
411,555 - 0.0
411,569 + -0.8
411,570 - 1.9
411,588 - -0.4
411,600 - 0.9
411,619 + 1.6
411,621 - -0.2
411,646 - 1.3
411,651 - 0.6
411,652 - -1.6
411,652 - 1.1
411,657 + 0.3
411,659 + -0.4
411,659 - 0.5
411,661 - 1.6
411,662 - 0.2
411,663 - -0.7
411,663 - 0.7
411,663 + -1.5
411,666 + 2.1
411,672 + -0.2
411,679 + -0.4
411,683 - -0.1
411,684 + 0.1
411,685 + 0.5
411,685 + -0.1
411,685 - 0.4
411,687 - 0.1
411,690 + -0.1
411,692 + -0.6
411,693 + 0.0
411,697 - 0.9
411,702 + -0.5
411,702 - -1.5
411,703 + 2.0
411,707 + 0.3
411,707 + -0.0
411,711 + 0.5
411,715 + 2.0
411,716 + 0.1
411,723 + -0.2
411,727 - 0.1
411,727 + -1.3
411,729 - 0.2
411,742 - -2.1
411,746 - -0.7
411,751 - 1.5
411,754 - 0.1
411,755 + -1.1
411,756 + 0.7
411,761 + -1.7
411,765 - 0.4
411,773 - 0.7
411,774 + -1.6
411,774 + -0.1
411,775 + 0.5
411,775 + -0.1
411,776 + -0.5
411,776 - 1.0
411,781 - 1.0
411,784 + -0.7
411,785 - -1.3
411,788 - -0.8
411,789 - 0.4
411,795 + 2.0
411,795 - -0.1
411,799 + 0.4
411,799 + 0.8
411,801 - 0.3
411,802 - -0.2
411,802 - -1.6
411,815 - -0.5
411,822 - 0.8
411,826 + 0.3
411,831 + 0.6
411,876 + 0.3
411,932 - 1.2
411,948 - -1.1
411,955 + -1.4
411,959 - -0.9
411,959 + 1.1
411,979 + 0.3
411,980 + -0.4
411,985 - -0.6
411,987 + -0.3
411,989 + -0.4
412,064 + -0.1
412,097 + -1.4
412,097 - 1.6