Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5572

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5571: 13939 - K14546 UTP5, WDR43 U3 small nucleolar RNA-associated protein 5, at 402481 to 405282 13939 mRNA_5572: 13940 - K18730 GIGYF PERQ amino acid-rich with GYF domain-containing protein, at 405680 to 409565 13940 mRNA_5573: 13941 - BLAST Protein priA [Hypsizygus marmoreus], at 409933 to 411114 13941

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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405,223 + 1.1
405,246 + 0.6
405,340 + 0.2
405,357 - -0.7
405,363 + 0.5
405,368 + -1.8
405,491 + -1.2
405,505 + 1.3
405,517 + 1.6
405,520 - 0.5
405,522 + 1.2
405,526 - 0.3
405,528 + 1.2
405,666 + 0.3
405,763 - -0.2
405,784 - -0.3
405,826 - 1.0
405,838 + 1.3
405,959 + -0.6
405,961 + -0.7
406,097 - 13940 mRNA_5572 0.11 -1.7
406,243 + 13940 mRNA_5572 0.14 -0.8
406,380 - 13940 mRNA_5572 0.18 0.2
406,956 - 13940 mRNA_5572 0.33 -0.8
407,115 + 13940 mRNA_5572 0.37 0.3
407,375 - 13940 mRNA_5572 0.44 -0.1
407,389 - 13940 mRNA_5572 0.44 -1.0
407,465 + 13940 mRNA_5572 0.46 -1.0
407,962 - 13940 mRNA_5572 0.59 1.0
408,002 + 13940 mRNA_5572 0.60 -0.3
409,527 + 0.2
409,575 - -0.4
409,590 + 0.2
409,598 - -0.2
409,614 + 0.4
409,614 + 1.4
409,617 - 0.3
409,624 + -0.6
409,670 - 1.6
409,696 - 0.9
409,717 - 1.2
409,730 + 1.1
409,755 - -0.7
409,834 - 0.9
409,863 - -2.8
409,939 + 1.5
410,023 + 3.1
410,040 + -0.2
410,115 + 13941 mRNA_5573 0.15 -0.0
410,306 + 13941 mRNA_5573 0.32 -0.9
410,323 + 13941 mRNA_5573 0.33 -0.1
410,562 + 13941 mRNA_5573 0.53 2.6