Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5549

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5548: 13916 - KOG4006 Anti-proliferation factor BTG1/TOB, at 346631 to 348391 13916 mRNA_5549: 13917 - K00027 ME2, sfcA, maeA malate dehydrogenase (oxaloacetate-decarboxylating), at 349196 to 351953 13917

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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348,259 + -0.7
348,390 + -0.4
348,436 + -1.3
348,561 - -0.6
348,592 + -0.4
348,705 - -0.7
348,713 - -1.6
348,723 + 0.4
348,727 + -0.1
348,727 + 1.4
348,730 + -0.4
348,730 - 0.4
348,730 + -1.7
348,733 - -1.6
348,735 - 1.6
348,739 - 1.2
348,875 - 1.2
348,877 - -0.1
348,896 - 0.3
349,034 - 1.3
349,045 - 0.6
349,148 + -0.5
349,164 + -1.4
349,171 + -1.1
349,177 - -0.4
349,186 + 0.1
349,309 - -1.2
349,320 + -0.2
349,468 + -0.7
349,749 - 13917 mRNA_5549 0.20 -1.7
349,756 + 13917 mRNA_5549 0.20 0.2
349,769 - 13917 mRNA_5549 0.21 -0.1
350,057 - 13917 mRNA_5549 0.31 -1.7
350,190 - 13917 mRNA_5549 0.36 0.7
350,616 + 13917 mRNA_5549 0.51 -0.2
350,805 - 13917 mRNA_5549 0.58 1.0
351,065 - 13917 mRNA_5549 0.68 0.9
351,118 - 13917 mRNA_5549 0.70 1.0
351,261 + 13917 mRNA_5549 0.75 -0.0
351,346 + 13917 mRNA_5549 0.78 0.9
352,155 + -0.3
352,410 + -2.0
352,428 + -2.0
352,566 + 0.4
352,749 + 1.1
352,864 + -0.1
352,922 - -1.1
352,950 + -2.2