Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5543

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5542: 13910 - Hypothetical Protein, at 336976 to 338321 13910 mRNA_5543: 13911 - K15190 MEPCE, BCDIN3 7SK snRNA methylphosphate capping enzyme, at 338637 to 339590 13911 mRNA_5544: 13912 - Hypothetical Protein, at 340231 to 341133 13912

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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337,866 - 13910 mRNA_5542 0.66 -0.0
337,883 + 13910 mRNA_5542 0.67 -0.4
338,309 + 0.2
338,315 - -0.8
338,320 - -1.6
338,330 + -1.0
338,339 + 0.3
338,342 + -0.8
338,346 + 0.6
338,480 - 0.6
338,488 - -1.4
338,490 - 0.9
338,894 - 13911 mRNA_5543 0.27 -1.2
339,031 - 13911 mRNA_5543 0.41 0.7
339,220 + 13911 mRNA_5543 0.61 2.9
339,629 - -0.1
339,636 - 1.1
339,650 + 0.6
339,677 + 1.8
339,765 - 0.1
339,786 + 1.1
339,796 - -1.8
339,802 + -0.5
339,806 + -0.3
339,815 + -0.4
339,871 - -1.1
339,878 + 0.3
339,897 + 0.1
339,963 - 2.6
339,975 + 1.0
339,986 + 0.4
340,003 + -1.0
340,003 - -1.3
340,084 - -0.3
340,125 - -0.3
340,233 + 1.9
340,234 - 0.2
340,236 + -0.3
340,243 - -0.2
340,380 + 13912 mRNA_5544 0.17 1.9
340,528 + 13912 mRNA_5544 0.33 1.7
340,551 + 13912 mRNA_5544 0.35 -0.4