Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5542

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5541: 13909 - K02482 K02482 two-component system, NtrC family, sensor kinase, at 333432 to 336799 13909 mRNA_5542: 13910 - Hypothetical Protein, at 336976 to 338321 13910 mRNA_5543: 13911 - K15190 MEPCE, BCDIN3 7SK snRNA methylphosphate capping enzyme, at 338637 to 339590 13911

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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335,996 - 13909 mRNA_5541 0.76 -2.7
336,027 - 13909 mRNA_5541 0.77 -1.0
336,279 - 13909 mRNA_5541 0.85 -1.4
336,469 - 0.8
336,621 - 0.0
336,625 + 1.7
336,705 + 0.6
337,012 - 2.9
337,205 - 13910 mRNA_5542 0.17 -0.4
337,213 + 13910 mRNA_5542 0.18 -0.5
337,320 - 13910 mRNA_5542 0.26 1.2
337,354 - 13910 mRNA_5542 0.28 -0.1
337,501 - 13910 mRNA_5542 0.39 -1.0
337,508 + 13910 mRNA_5542 0.40 -0.2
337,866 - 13910 mRNA_5542 0.66 -0.0
337,883 + 13910 mRNA_5542 0.67 -0.4
338,309 + 0.2
338,315 - -0.8
338,320 - -1.6
338,330 + -1.0
338,339 + 0.3
338,342 + -0.8
338,346 + 0.6
338,480 - 0.6
338,488 - -1.4
338,490 - 0.9
338,894 - 13911 mRNA_5543 0.27 -1.2
339,031 - 13911 mRNA_5543 0.41 0.7
339,220 + 13911 mRNA_5543 0.61 2.9