Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5541

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5540: 13908 - Interpro GDP-fucose protein O-fucosyltransferase, at 330944 to 333027 13908 mRNA_5541: 13909 - K02482 K02482 two-component system, NtrC family, sensor kinase, at 333432 to 336799 13909 mRNA_5542: 13910 - Hypothetical Protein, at 336976 to 338321 13910

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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332,811 + 13908 mRNA_5540 0.90 2.6
332,923 + -2.2
332,978 + -1.9
333,094 - 1.7
333,219 + 0.5
333,222 + -1.1
333,255 + 0.2
333,261 - -0.5
333,261 - -0.5
333,271 - -0.1
333,279 + 0.3
333,335 + 0.3
333,339 - 0.6
333,343 - -2.0
333,352 - 0.1
333,355 - 0.6
333,356 + -1.4
333,361 + 0.1
333,361 - -0.1
333,362 + -1.1
333,372 + 1.0
333,379 - -1.1
333,383 + 0.3
333,405 - 1.9
333,407 + 1.9
333,443 - -1.0
333,485 - -1.2
333,542 + -0.5
333,575 - 0.0
333,580 - 0.2
333,683 - -2.5
333,699 + -0.2
333,853 - 13909 mRNA_5541 0.12 -1.2
334,432 - 13909 mRNA_5541 0.30 0.6
334,585 + 13909 mRNA_5541 0.34 1.8
334,861 + 13909 mRNA_5541 0.42 -1.0
335,002 - 13909 mRNA_5541 0.47 -0.5
335,524 + 13909 mRNA_5541 0.62 -2.5
335,685 + 13909 mRNA_5541 0.67 0.1
335,794 - 13909 mRNA_5541 0.70 0.9
335,924 + 13909 mRNA_5541 0.74 -0.4
335,951 + 13909 mRNA_5541 0.75 -0.5
335,996 - 13909 mRNA_5541 0.76 -2.7
336,027 - 13909 mRNA_5541 0.77 -1.0
336,279 - 13909 mRNA_5541 0.85 -1.4
336,469 - 0.8
336,621 - 0.0
336,625 + 1.7
336,705 + 0.6
337,012 - 2.9
337,205 - 13910 mRNA_5542 0.17 -0.4
337,213 + 13910 mRNA_5542 0.18 -0.5
337,320 - 13910 mRNA_5542 0.26 1.2
337,354 - 13910 mRNA_5542 0.28 -0.1
337,501 - 13910 mRNA_5542 0.39 -1.0
337,508 + 13910 mRNA_5542 0.40 -0.2