Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5535

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5534: 13902 - K18798 AFG1, LACE1 peroxisome-assembly ATPase, at 315936 to 317983 13902 mRNA_5535: 13903 - K15305 VAC14, TAX1BP2 vacuole morphology and inheritance protein 14, at 318348 to 322384 13903 mRNA_5536: 13904 - Hypothetical Protein, at 322636 to 323526 13904

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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317,541 + 13902 mRNA_5534 0.78 -0.2
317,550 - 13902 mRNA_5534 0.79 1.3
317,558 + 13902 mRNA_5534 0.79 0.4
317,562 + 13902 mRNA_5534 0.79 0.8
317,699 + 13902 mRNA_5534 0.86 0.4
317,722 - 13902 mRNA_5534 0.87 0.8
317,741 - 13902 mRNA_5534 0.88 -1.8
317,855 + 1.0
318,012 + -2.6
318,028 - 2.0
318,029 + -0.7
318,033 + 1.1
318,042 + -1.3
318,046 + 0.1
318,173 - -1.1
318,304 - -1.0
318,310 + -0.7
318,313 + 0.0
318,313 + -0.7
318,562 + -0.4
319,366 - 13903 mRNA_5535 0.25 -1.3
319,640 + 13903 mRNA_5535 0.32 1.3
319,949 + 13903 mRNA_5535 0.40 0.6
320,227 - 13903 mRNA_5535 0.47 0.1
320,398 - 13903 mRNA_5535 0.51 0.6
320,521 + 13903 mRNA_5535 0.54 0.1
320,658 - 13903 mRNA_5535 0.57 -0.0
320,682 + 13903 mRNA_5535 0.58 -0.0
320,983 - 13903 mRNA_5535 0.65 0.7
321,244 - 13903 mRNA_5535 0.72 -0.6
321,437 + 13903 mRNA_5535 0.77 -2.5
321,550 - 13903 mRNA_5535 0.79 -1.1
321,660 + 13903 mRNA_5535 0.82 1.6
321,706 - 13903 mRNA_5535 0.83 0.2
321,938 - 13903 mRNA_5535 0.89 -0.1
321,950 - 13903 mRNA_5535 0.89 0.6
322,217 + 0.4
322,388 + 0.4
322,567 + -0.5
322,859 + 13904 mRNA_5536 0.25 -0.4
323,160 + 13904 mRNA_5536 0.59 1.7
323,280 - 13904 mRNA_5536 0.72 2.1