Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5533

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5532: 13900 - K01519 ITPA inosine triphosphate pyrophosphatase, at 312608 to 313852 13900 mRNA_5533: 13901 - Hypothetical Protein, at 314025 to 315738 13901 mRNA_5534: 13902 - K18798 AFG1, LACE1 peroxisome-assembly ATPase, at 315936 to 317983 13902

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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313,061 + 13900 mRNA_5532 0.36 1.1
313,348 + 13900 mRNA_5532 0.59 -1.3
313,645 + 13900 mRNA_5532 0.83 0.6
313,756 + -0.5
313,987 + -0.5
314,515 + 13901 mRNA_5533 0.29 -1.1
314,781 + 13901 mRNA_5533 0.44 -1.5
314,795 + 13901 mRNA_5533 0.45 0.6
315,832 + -0.5
315,836 + 1.1
315,843 + -0.3
315,973 - -2.0
316,083 - -1.3
316,107 + -0.6
316,119 - 0.1
316,121 + 0.3
316,550 + 13902 mRNA_5534 0.30 -0.2