Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5523

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5522: 13890 - ProSiteProfiles-Zinc finger TRAF-type profile.-PS50145, at 293520 to 294673 13890 mRNA_5523: 13891 - ProSiteProfiles-Zinc finger RING-type profile.-PS50089,SUPERFAMILY--SSF57850, at 295158 to 296227 13891 mRNA_5524: 13892 - KOG3002 Zn finger protein, at 297072 to 298317 13892

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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294,175 + 13890 mRNA_5522 0.57 -0.7
294,199 - 13890 mRNA_5522 0.59 0.9
294,223 - 13890 mRNA_5522 0.61 0.1
294,226 + 13890 mRNA_5522 0.61 -0.1
294,348 + 13890 mRNA_5522 0.72 -0.1
294,438 + 13890 mRNA_5522 0.80 -0.4
294,482 + 13890 mRNA_5522 0.83 0.9
294,488 - 13890 mRNA_5522 0.84 1.3
294,499 - 13890 mRNA_5522 0.85 -1.7
294,505 + 13890 mRNA_5522 0.85 -1.5
294,512 + 13890 mRNA_5522 0.86 -1.7
294,616 + 2.9
294,637 - 0.9
294,654 + -1.4
294,672 - -0.1
294,787 - -0.5
294,797 - 0.5
294,803 - -0.5
294,809 - 0.2
294,813 + -0.9
294,882 + -2.8
294,985 + 0.8
294,985 + 1.5
294,985 + 0.7
294,985 + 1.8
294,995 + 1.8
295,044 - -0.8
295,104 + -0.0
295,220 - 1.4
295,221 - -0.5
295,221 + -1.5
295,529 - 13891 mRNA_5523 0.35 1.3
295,577 + 13891 mRNA_5523 0.39 1.6
295,582 - 13891 mRNA_5523 0.40 0.5
295,824 + 13891 mRNA_5523 0.62 -0.6
295,829 + 13891 mRNA_5523 0.63 -1.0
295,944 - 13891 mRNA_5523 0.73 1.0
296,007 + 13891 mRNA_5523 0.79 1.8
296,020 + 13891 mRNA_5523 0.81 0.4
296,121 + -1.3
296,149 - 1.0
296,414 - -0.5
296,607 - -1.7
296,701 - -0.8
296,835 - -1.2
296,850 + 0.3
296,866 - 1.6
296,866 - 0.1
296,875 + -0.5
297,011 - 0.3
297,140 - -2.0