Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5522

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5521: 13889 - ProSiteProfiles-Zinc finger RING-type profile.-PS50089,ProSiteProfiles-Zinc finger TRAF-type profile.-PS50145,SUPERFAMILY--SSF49599,SUPERFAMILY--SSF57850, at 291900 to 293030 13889 mRNA_5522: 13890 - ProSiteProfiles-Zinc finger TRAF-type profile.-PS50145, at 293520 to 294673 13890 mRNA_5523: 13891 - ProSiteProfiles-Zinc finger RING-type profile.-PS50089,SUPERFAMILY--SSF57850, at 295158 to 296227 13891

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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292,590 + 13889 mRNA_5521 0.61 0.5
292,592 - 13889 mRNA_5521 0.61 0.6
292,629 - 13889 mRNA_5521 0.64 1.1
292,647 + 13889 mRNA_5521 0.66 0.5
292,702 + 13889 mRNA_5521 0.71 1.4
292,708 - 13889 mRNA_5521 0.71 0.7
292,756 - 13889 mRNA_5521 0.76 0.1
292,767 + 13889 mRNA_5521 0.77 2.0
292,898 + 13889 mRNA_5521 0.88 0.5
292,924 - 0.6
292,935 + 1.9
293,058 + 0.0
293,100 + 2.4
293,190 - -0.5
293,201 + -4.0
293,216 - 0.2
293,222 - -0.4
293,390 + 1.9
293,444 - 0.1
293,507 - 0.5
293,908 + 13890 mRNA_5522 0.34 -1.6
293,911 + 13890 mRNA_5522 0.34 1.0
294,001 - 13890 mRNA_5522 0.42 -0.0
294,096 - 13890 mRNA_5522 0.50 0.6
294,175 + 13890 mRNA_5522 0.57 -0.7
294,199 - 13890 mRNA_5522 0.59 0.9
294,223 - 13890 mRNA_5522 0.61 0.1
294,226 + 13890 mRNA_5522 0.61 -0.1
294,348 + 13890 mRNA_5522 0.72 -0.1
294,438 + 13890 mRNA_5522 0.80 -0.4
294,482 + 13890 mRNA_5522 0.83 0.9
294,488 - 13890 mRNA_5522 0.84 1.3
294,499 - 13890 mRNA_5522 0.85 -1.7
294,505 + 13890 mRNA_5522 0.85 -1.5
294,512 + 13890 mRNA_5522 0.86 -1.7
294,616 + 2.9
294,637 - 0.9
294,654 + -1.4
294,672 - -0.1
294,787 - -0.5
294,797 - 0.5
294,803 - -0.5
294,809 - 0.2
294,813 + -0.9
294,882 + -2.8
294,985 + 0.8
294,985 + 1.5
294,985 + 0.7
294,985 + 1.8
294,995 + 1.8
295,044 - -0.8
295,104 + -0.0
295,220 - 1.4
295,221 - -0.5
295,221 + -1.5
295,529 - 13891 mRNA_5523 0.35 1.3
295,577 + 13891 mRNA_5523 0.39 1.6
295,582 - 13891 mRNA_5523 0.40 0.5