Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5509

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5508: 13876 - KOG0297 TNF receptor-associated factor, at 262441 to 263588 13876 mRNA_5509: 13877 - ProSiteProfiles-Zinc finger RING-type profile.-PS50089,SUPERFAMILY--SSF49599,SUPERFAMILY--SSF57850, at 264045 to 264907 13877 mRNA_5510: 13878 - ProSiteProfiles-Zinc finger RING-type profile.-PS50089,ProSiteProfiles-Zinc finger TRAF-type profile.-PS50145,SUPERFAMILY--SSF49599,SUPERFAMILY--SSF57850, at 265643 to 266758 13878

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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263,365 - 13876 mRNA_5508 0.80 1.7
263,445 - 13876 mRNA_5508 0.87 0.2
263,578 - -0.1
263,579 + 3.0
263,582 - 0.2
263,689 - 1.4
263,708 - -0.4
263,718 - -0.3
263,727 - 2.0
263,732 + -1.8
263,732 + 0.2
263,736 - 0.5
263,749 + -1.0
263,844 + 0.7
263,878 + -0.6
264,436 - 13877 mRNA_5509 0.45 -0.5
264,473 + 13877 mRNA_5509 0.50 1.1
264,623 - 13877 mRNA_5509 0.67 1.6
265,467 - 1.0
265,492 + -1.3
265,493 + 0.8
265,529 - -1.1
265,607 + 0.3
265,632 - 0.6
265,753 - 2.7
265,907 - 13878 mRNA_5510 0.24 1.8