Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5508

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5508: 13876 - KOG0297 TNF receptor-associated factor, at 262441 to 263588 13876 mRNA_5509: 13877 - ProSiteProfiles-Zinc finger RING-type profile.-PS50089,SUPERFAMILY--SSF49599,SUPERFAMILY--SSF57850, at 264045 to 264907 13877

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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261,517 - -2.3
261,525 + -1.1
261,546 + 0.3
261,564 + 0.2
261,653 - -1.6
261,828 - -0.6
262,128 - 1.9
262,548 + 2.8
262,710 - 13876 mRNA_5508 0.23 -0.0
262,723 + 13876 mRNA_5508 0.25 2.3
262,806 + 13876 mRNA_5508 0.32 0.4
262,895 - 13876 mRNA_5508 0.40 -2.3
263,365 - 13876 mRNA_5508 0.80 1.7
263,445 - 13876 mRNA_5508 0.87 0.2
263,578 - -0.1
263,579 + 3.0
263,582 - 0.2
263,689 - 1.4
263,708 - -0.4
263,718 - -0.3
263,727 - 2.0
263,732 + -1.8
263,732 + 0.2
263,736 - 0.5
263,749 + -1.0
263,844 + 0.7
263,878 + -0.6
264,436 - 13877 mRNA_5509 0.45 -0.5
264,473 + 13877 mRNA_5509 0.50 1.1