Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5500

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5499: 13867 - KOG1208 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases), at 240567 to 242106 13867 mRNA_5500: 13868 - HMMPfam-BTB/POZ domain-PF00651,ProSiteProfiles-BTB domain profile.-PS50097,ProSiteProfiles-MATH/TRAF domain profile.-PS50144,SUPERFAMILY--SSF49599,SUPERFAMILY--SSF54695, at 242489 to 245110 13868 mRNA_5501: 13869 - Hypothetical Protein, at 245382 to 247759 13869

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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242,007 + -0.0
242,009 + -1.6
242,120 + -0.5
242,144 - -0.4
242,160 + 1.1
242,181 - 1.0
242,193 + -0.3
242,467 - 0.3
242,470 + -0.4
242,483 - 0.1
242,719 + -0.4
242,736 + 2.0
242,760 - 13868 mRNA_5500 0.10 0.9
242,800 - 13868 mRNA_5500 0.12 -0.1
242,899 - 13868 mRNA_5500 0.16 0.4
243,050 + 13868 mRNA_5500 0.21 0.1
243,117 + 13868 mRNA_5500 0.24 -0.1
243,217 - 13868 mRNA_5500 0.28 -1.2
243,477 + 13868 mRNA_5500 0.38 -0.3
243,709 - 13868 mRNA_5500 0.47 0.6
243,837 + 13868 mRNA_5500 0.51 0.8
243,841 - 13868 mRNA_5500 0.52 0.7
243,857 - 13868 mRNA_5500 0.52 0.8
243,993 - 13868 mRNA_5500 0.57 -0.9
244,300 + 13868 mRNA_5500 0.69 1.4
245,091 + -0.3
245,115 + 0.0
245,379 - 1.4
245,406 - 1.1
245,720 + 13869 mRNA_5501 0.14 0.6