Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5493

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5492: 13860 - K15436 TRPO3, MTR10 transportin-3, at 223260 to 226500 13860 mRNA_5493: 13861 - KOG0297 TNF receptor-associated factor, at 226930 to 227786 13861 mRNA_5494: 13862 - KOG1119 Mitochondrial Fe-S cluster biosynthesis protein ISA2 (contains a HesB-like domain), at 228031 to 229041 13862

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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226,592 + -0.6
226,608 - -0.1
226,611 + -0.9
226,612 + -0.8
226,613 - -2.5
226,623 + 0.1
226,756 - 1.5
227,066 + 13861 mRNA_5493 0.16 -1.9
227,196 + 13861 mRNA_5493 0.31 0.1
227,211 + 13861 mRNA_5493 0.33 -0.3
227,232 + 13861 mRNA_5493 0.35 1.4
227,489 - 13861 mRNA_5493 0.65 -2.0
227,536 - 13861 mRNA_5493 0.71 -0.5