Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5486

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5485: 13853 - K02896 RP-L24e, RPL24 large subunit ribosomal protein L24e, at 209798 to 210668 13853 mRNA_5486: 13854 - K15695 RNF103, KF1 E3 ubiquitin-protein ligase RNF103, at 211057 to 213286 13854 mRNA_5487: 13855 - HMMPfam-Protein kinase domain-PF00069,ProSiteProfiles-Protein kinase domain profile.-PS50011,SUPERFAMILY--SSF56112, at 213824 to 214622 13855

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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210,672 - 1.4
210,678 + 0.7
210,686 - 2.4
210,726 + -0.0
211,397 + 13854 mRNA_5486 0.15 -1.2
211,996 - 13854 mRNA_5486 0.42 0.5
211,999 - 13854 mRNA_5486 0.42 -0.2
212,009 + 13854 mRNA_5486 0.43 0.6
212,251 - 13854 mRNA_5486 0.54 -1.0
212,622 + 13854 mRNA_5486 0.70 -1.5
212,626 + 13854 mRNA_5486 0.70 1.3
212,710 - 13854 mRNA_5486 0.74 -0.5
212,781 - 13854 mRNA_5486 0.77 -0.7
212,811 - 13854 mRNA_5486 0.79 0.3
212,811 - 13854 mRNA_5486 0.79 -1.6
213,057 + 13854 mRNA_5486 0.90 -1.0
213,510 - -0.0
213,641 + 2.1
213,658 - -0.2
214,062 - 13855 mRNA_5487 0.30 -0.4
214,102 + 13855 mRNA_5487 0.35 -2.9
214,135 + 13855 mRNA_5487 0.39 0.3
214,201 + 13855 mRNA_5487 0.47 -0.5