Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5463

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5462: 13830 - HMMPfam-Bacteriorhodopsin-like protein-PF01036,PRINTS-Bacterial opsin signature-PR00251,ProSitePatterns-Bacterial rhodopsins signature 1.-PS00950,SMART-Bacteriorhodopsin-like protein-SM01021,SUPERFAMILY--SSF81321, at 148438 to 149863 13830 mRNA_5463: 13831 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 150414 to 154047 13831 mRNA_5464: 13832 - K09579 PIN4 peptidyl-prolyl cis-trans isomerase NIMA-interacting 4, at 155001 to 155781 13832

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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149,447 + 13830 mRNA_5462 0.71 0.9
149,450 - 13830 mRNA_5462 0.71 0.7
149,498 - 13830 mRNA_5462 0.74 0.1
149,572 + 13830 mRNA_5462 0.80 -0.9
149,680 + 13830 mRNA_5462 0.87 -0.1
149,932 + 0.1
150,239 - 1.1
150,328 + -0.3
150,393 - -2.3
150,536 + 0.6
150,671 + 0.9
151,138 + 13831 mRNA_5463 0.20 0.3
151,315 - 13831 mRNA_5463 0.25 -1.4
151,548 - 13831 mRNA_5463 0.31 0.5
151,602 - 13831 mRNA_5463 0.33 -1.3
151,650 + 13831 mRNA_5463 0.34 0.4
152,149 + 13831 mRNA_5463 0.48 0.8
152,311 + 13831 mRNA_5463 0.52 -0.4
152,320 - 13831 mRNA_5463 0.52 -0.1
152,599 + 13831 mRNA_5463 0.60 0.9
152,644 + 13831 mRNA_5463 0.61 0.7
152,684 - 13831 mRNA_5463 0.62 -1.0
152,899 - 13831 mRNA_5463 0.68 1.7
152,995 + 13831 mRNA_5463 0.71 -0.6
153,020 - 13831 mRNA_5463 0.72 -0.6
153,645 + 13831 mRNA_5463 0.89 0.2
153,668 + 13831 mRNA_5463 0.90 0.2
153,774 - -0.2
153,813 - -0.8
153,820 - 0.2
153,921 - -1.0
153,924 - -0.8
153,932 - -0.1
153,934 - -0.1
153,939 - 1.1
153,940 - 1.7
153,944 + -0.3
153,946 + 0.2
153,949 + -1.3
153,949 - 1.1
153,957 + -0.4
153,958 - 0.3
153,959 + 1.9
153,961 + -1.2
153,961 - -0.0
153,963 + -0.9
153,964 - -0.0
153,967 + -0.5
153,967 + -0.5
153,968 + -0.5
153,970 - -0.2
153,981 + -1.4
154,101 - 0.8
154,110 + 0.2
154,110 + 1.2
154,116 + 0.5
154,129 - -1.0
154,130 - 0.6
154,131 + 0.9
154,132 - 1.0
154,133 - -1.7
154,143 + -0.0
154,153 - 0.8
154,156 + 2.5
154,157 + 0.5
154,170 + 1.4
154,204 + 0.2
154,204 - -2.3
154,204 + 0.1
154,250 + 1.3
154,267 - 1.1
154,284 + 0.3
154,285 - 0.2
154,301 - -0.4
154,301 - 2.0
154,310 - -0.4
154,316 - -0.7
154,320 - -0.2
154,320 - -0.2
154,321 + 0.7
154,324 + -0.3
154,327 - 1.4
154,330 - 0.7
154,332 + -1.4
154,337 - 0.5
154,350 + 0.3
154,437 + -0.3
154,450 + -0.1
154,455 - 1.2
154,460 + -0.5
154,473 - 2.1
154,491 + -1.9
154,495 - 1.5
154,546 + 1.1
154,552 + 1.2
154,564 + 0.1
154,579 + -0.6
154,581 + -0.5
154,592 - -0.4
154,599 - -0.0
154,681 - 0.3
154,685 + -0.1
154,710 - -0.1
154,723 + -0.1
154,738 + -0.2
154,753 - 0.2
154,764 - 1.2
154,764 - 0.2
154,771 + -0.9
154,773 - -0.9
154,814 + -0.4
154,930 - -0.2