Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5461

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5460: 13828 - Hypothetical Protein, at 142761 to 144304 13828 mRNA_5461: 13829 - KOG1721 FOG Zn-finger, at 144867 to 148106 13829 mRNA_5462: 13830 - HMMPfam-Bacteriorhodopsin-like protein-PF01036,PRINTS-Bacterial opsin signature-PR00251,ProSitePatterns-Bacterial rhodopsins signature 1.-PS00950,SMART-Bacteriorhodopsin-like protein-SM01021,SUPERFAMILY--SSF81321, at 148438 to 149863 13830

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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143,902 - 13828 mRNA_5460 0.74 -0.0
144,828 - 0.5
144,832 - 1.0
144,939 + -1.9
145,112 - 1.4
145,132 - 0.9
145,133 + 0.3
145,301 - 13829 mRNA_5461 0.13 1.6
145,316 - 13829 mRNA_5461 0.14 0.1
145,388 + 13829 mRNA_5461 0.16 -0.5
145,420 + 13829 mRNA_5461 0.17 -0.6
145,595 - 13829 mRNA_5461 0.22 -0.7
145,714 - 13829 mRNA_5461 0.26 1.1
145,854 - 13829 mRNA_5461 0.30 1.7
145,861 + 13829 mRNA_5461 0.31 1.5
145,999 + 13829 mRNA_5461 0.35 0.3
146,264 + 13829 mRNA_5461 0.43 0.5
146,605 + 13829 mRNA_5461 0.54 -0.1
146,701 - 13829 mRNA_5461 0.57 0.5
146,701 - 13829 mRNA_5461 0.57 -0.4
146,705 + 13829 mRNA_5461 0.57 0.1
146,850 - 13829 mRNA_5461 0.61 -1.2
146,871 + 13829 mRNA_5461 0.62 -0.0
146,871 - 13829 mRNA_5461 0.62 0.2
146,877 + 13829 mRNA_5461 0.62 -0.0
147,003 - 13829 mRNA_5461 0.66 0.5
147,009 + 13829 mRNA_5461 0.66 -3.0
147,022 + 13829 mRNA_5461 0.67 0.3
147,025 + 13829 mRNA_5461 0.67 0.0
147,159 - 13829 mRNA_5461 0.71 2.3
147,284 - 13829 mRNA_5461 0.75 1.2
147,332 - 13829 mRNA_5461 0.76 -1.0
147,492 - 13829 mRNA_5461 0.81 -1.2
147,583 - 13829 mRNA_5461 0.84 1.2
147,634 - 13829 mRNA_5461 0.85 -0.4
148,363 + 1.0
148,466 + -0.0
148,498 + 0.1
148,568 - 0.1
148,583 - 13830 mRNA_5462 0.10 -0.2
148,631 + 13830 mRNA_5462 0.14 1.8
148,702 + 13830 mRNA_5462 0.19 -0.3
148,711 - 13830 mRNA_5462 0.19 0.9
148,783 + 13830 mRNA_5462 0.24 0.2
148,815 + 13830 mRNA_5462 0.26 0.4
148,939 - 13830 mRNA_5462 0.35 -1.6