Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5450

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5449: 13817 - HMMPfam-MYND finger-PF01753,ProSitePatterns-Zinc finger MYND-type signature.-PS01360,ProSiteProfiles-Zinc finger MYND-type profile.-PS50865,SUPERFAMILY--SSF144232, at 117409 to 118509 13817 mRNA_5450: 13818 - KOG0255 Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily), at 118824 to 121253 13818

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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117,966 + 13817 mRNA_5449 0.51 -1.5
117,972 + 13817 mRNA_5449 0.51 1.0
118,025 - 13817 mRNA_5449 0.56 -1.2
118,074 - 13817 mRNA_5449 0.60 1.1
118,099 + 13817 mRNA_5449 0.63 -1.1
118,263 + 13817 mRNA_5449 0.78 -2.0
118,367 - 13817 mRNA_5449 0.87 1.1
118,375 - 13817 mRNA_5449 0.88 -0.6
118,392 + 13817 mRNA_5449 0.89 -0.0
118,395 - 13817 mRNA_5449 0.90 0.2
118,395 - 13817 mRNA_5449 0.90 -1.0
118,395 - 13817 mRNA_5449 0.90 1.2
118,401 + 0.4
118,488 - -1.7
118,489 + -1.6
118,831 - -0.5
118,836 + 1.0
118,936 + -1.9
119,291 + 13818 mRNA_5450 0.19 -0.2
119,583 - 13818 mRNA_5450 0.31 -2.1
119,721 - 13818 mRNA_5450 0.37 0.5
119,901 - 13818 mRNA_5450 0.44 1.0
120,138 - 13818 mRNA_5450 0.54 -0.1
120,338 - 13818 mRNA_5450 0.62 -0.2
120,605 + 13818 mRNA_5450 0.73 0.7
120,775 + 13818 mRNA_5450 0.80 -1.5
120,931 + 13818 mRNA_5450 0.87 1.3
121,143 - -0.4
121,201 - -0.1
121,226 + 1.0
121,317 + -0.5
121,539 - 0.9
121,770 - -0.4
121,785 + -0.4
121,938 + 1.0
122,078 - -0.8
122,080 + 0.2
122,093 - 1.8
122,096 - -2.6
122,116 - -0.6